PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g10930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21210.7 Da PI: 4.5687 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 53 | 102 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r++lg+f t eAa+a++ a+++l+g CA12g10930 53 TYRGVRQRT-WGKWVAEIREP---N-RgARIWLGTFNTSLEAARAYDDAARRLYG 102 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.58E-19 | 52 | 112 | No hit | No description |
SMART | SM00380 | 1.2E-34 | 53 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 53 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.878 | 53 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 53 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 53 | 110 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-10 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MAESVESVSV CIPIVEEPKS DTNNSPTVKK STVGRSRKGC MRGKGGPENA LCTYRGVRQR 60 TWGKWVAEIR EPNRGARIWL GTFNTSLEAA RAYDDAARRL YGADAKLNLS ESSEESPLTD 120 KEFISRPETC MENIIEGGEC SVLEEASIFK DGNGEYLVWE TPVPSLMGEQ DHNIMMSGLD 180 FPGDNTGLNW IN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-17 | 54 | 109 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574802.1 | 1e-141 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | A0A1U8GU74 | 1e-139 | A0A1U8GU74_CAPAN; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A2G2Y7M7 | 1e-139 | A0A2G2Y7M7_CAPAN; dehydration-responsive element-binding protein 2C-like | ||||
STRING | XP_009630729.1 | 3e-65 | (Nicotiana tomentosiformis) | ||||
STRING | PGSC0003DMT400073853 | 4e-66 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 9e-35 | ERF family protein |