PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g10410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | G2-like | ||||||||
Protein Properties | Length: 91aa MW: 10394.3 Da PI: 10.1902 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.1 | 8e-28 | 1 | 52 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++WtpeLHe+F+ea+++LG se+AtPk +l+lmkv+ Lt++hvk HLQkYR+ CA12g10410 1 MHWTPELHEAFMEAINKLGRSERATPKGVLKLMKVEVLTIYHVKCHLQKYRM 52 78*************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 4.1E-22 | 1 | 52 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.78E-15 | 1 | 53 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.135 | 1 | 55 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 1 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 2 | 51 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MHWTPELHEA FMEAINKLGR SERATPKGVL KLMKVEVLTI YHVKCHLQKY RMARYKPEAS 60 KGSEKKESSI SDLLSLDLKI SIEITKALRL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-29 | 1 | 56 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-29 | 1 | 56 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-29 | 1 | 56 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-29 | 1 | 56 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-29 | 1 | 56 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-29 | 1 | 56 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-29 | 1 | 56 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-29 | 1 | 56 | 5 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:11511543, PubMed:17927693, PubMed:26586833). Binds as a dimer to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:11511543, PubMed:20838596, PubMed:26586833). SPX1 is a competitive inhibitor of this DNA-binding (PubMed:25271326). PHR1 binding to its targets is low Pi-dependent (PubMed:25271326). Regulates the expression of miR399 (PubMed:20838596). Regulates the expression of IPS1 (At3g09922), a non-coding RNA that mimics the target of miR399 to block the cleavage of PHO2 under Pi-deficient conditions (PubMed:17643101). Regulates lipid remodeling and triacylglycerol accumulation during phosphorus starvation (PubMed:25680792). Required for the shoot-specific hypoxic response (PubMed:24753539). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). Contributes to the homeostasis of both sulfate and phosphate in plants under phosphate deficiency (PubMed:21261953). Required for adaptation to high light and retaining functional photosynthesis during phosphate starvation (PubMed:21910737). Involved in the coregulation of Zn and Pi homeostasis (PubMed:24420568). {ECO:0000269|PubMed:11511543, ECO:0000269|PubMed:17643101, ECO:0000269|PubMed:17927693, ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:21261953, ECO:0000269|PubMed:21910737, ECO:0000269|PubMed:23788639, ECO:0000269|PubMed:24420568, ECO:0000269|PubMed:24753539, ECO:0000269|PubMed:25271326, ECO:0000269|PubMed:25680792, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Only moderately up-regulated by Pi starvation. {ECO:0000269|PubMed:11511543}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016576060.1 | 3e-46 | PREDICTED: protein PHR1-LIKE 1-like isoform X1 | ||||
Refseq | XP_016576061.1 | 3e-46 | PREDICTED: protein PHR1-LIKE 1-like isoform X2 | ||||
Swissprot | Q94CL7 | 9e-36 | PHR1_ARATH; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A2G2Y8P9 | 1e-58 | A0A2G2Y8P9_CAPAN; Uncharacterized protein | ||||
STRING | XP_009781296.1 | 3e-42 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12062 | 16 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 2e-29 | phosphate starvation response 1 |