PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g10380
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 1621aa    MW: 176870 Da    PI: 5.7048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g10380genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-08755796346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT  E e++++  + +G++ +++Ia+ +  ++t  +c+++++k
       CA12g10380 755 PWTSKEREIFIEKLATFGKD-FRKIASFLD-HKTTADCIEFYYK 796
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding28.53.5e-099731013345
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                        WT eE   +++av  +G++ +  ++r++g +R++ qck ++ 
       CA12g10380  973 DWTDEEKSAFIQAVSAYGKD-FIMVSRRVG-TRSRDQCKIFFS 1013
                       5*****************99.*********.********8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.96E-13739799IPR009057Homeodomain-like
PROSITE profilePS5129316.082751802IPR017884SANT domain
SMARTSM007171.4E-8752800IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-5755796IPR009057Homeodomain-like
PfamPF002497.3E-6755796IPR001005SANT/Myb domain
PROSITE profilePS5129311.6079691020IPR017884SANT domain
SMARTSM007173.9E-79701018IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-109721021IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-69731014IPR009057Homeodomain-like
PfamPF002493.6E-79731012IPR001005SANT/Myb domain
CDDcd001671.13E-59741012No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1621 aa     Download sequence    Send to blast
HGKQGSWQMY PEELGHGFMT SRSNEKIVED ESCRQSRGDA GKYGRNSSSS RENRSFGQRD  60
WRGGGGAHSW EAASPSGSGS VRQNDATNNQ RSLDVMEPHS EHVNTCDQSH SRDQHNKSAT  120
ANATASTGQR FERETSLGSI EWRPLKWTRS GSLSSRGSLS HSGSMGVDSN ETKPELRLGN  180
SKAVQSLTGD ATACVTSAAP SEETTSRKKP RLGWGEGLAK YEKKKVEGPE DNAVKVGTSI  240
SGDSVEPSHS QLLNQADRSP RVAVFPDCQS PATPSSVACS SSPGLEDKQL VKATNIDQDV  300
GNLCGSPNVV SQYYSEGSGF NLENWDLAQI SNLNSSINKL LQSEDPSSVD SGFMRSTAVN  360
KLLVWKSDIT KALEKTEAEI DSLENELKTL ISGPKNTQLV PSASCSPPKD CNANSHEDQG  420
ATSNIASGPA PLVVDIPDDL VGEEGANIHE NEQTEVKVED IDSPGSATSK FVELPSEKDV  480
APVDALKHGG IFISDDSKSR RLNVNMCSFT EESAKSRSSD VKLCSFNEEK ARDTLVCWER  540
SQPTAGYSYS ASNGILNGGE DALYNLILAA NKDSARRAFE VFKNLLPASK CSFDFSRTVR  600
VSLLQIDHAV EERFAKRKQF QQFKEKIIAL KFRVHQHLWK EDIRMLSVRR FRAKSQKKFD  660
LSLRPVQIGH QKHRATVRSR FSTTVGNLSL VPSSEILNFA SRLLSELGAK VYRNTLRMPA  720
LILDQKERMM TRFISKNSLV EDPCAVEEER GLINPWTSKE REIFIEKLAT FGKDFRKIAS  780
FLDHKTTADC IEFYYKNHKS DCFERTRRKP DYSKQAKVCS ANRYLVASSG KRWNREANSA  840
SLDILGAASA IAANVEDSIE IQPKGTSKYT VRMITEYKAS RLNELERSNS LDVCHSERET  900
VAVDVLAGIC GSLSSEAMSS CITSSVDPGE GNQEWKHQKV GSSTRLPRTP EVTQSMDDET  960
CSDESCGEMD PTDWTDEEKS AFIQAVSAYG KDFIMVSRRV GTRSRDQCKI FFSKARKCLG  1020
LDKILPVPGN LERQDVNGGS DPDACSMETK LLCNGKSSLM LEDVSDLCMK VGISNHNLTS  1080
SDEKDGAGEL DSVDILQVNC DVDKQEVEFN RDCDQIGACI GNGRGDENMV IVSQEGVEIG  1140
GDASENGLPD IPCPNEVSAE HLGEEISSPE HDLKDRKAEI AEVGRSNCSL EDRKPNMVLS  1200
GNNSGLAAPR GGGLCPLNGF QNITHLESDS ECKLYLESNI SVQSKQMPEG ANADKLSEEL  1260
ENVCDEQCEN ATQSAELPLP SHSLLAQVES CQILGSYSVG ESALTQFGDP GCRTSAALQE  1320
IQKVGRNLQL DTFSTTGCFL QKCNGTNRGG GSVSDVQIPN REQTAGSSSN LEKHCRNGDV  1380
KLFGQILSKP CPQANPSSNA HRSDGSNQQL KIGSDSFSAS HILDGNSATA KFERNNFPCS  1440
ETHQLRSFGF WDGNRIQTGF SSLPDSAILL AKYPAAFGNY GISSTKMEQP TLHGAVKMAE  1500
RNLNGVPGFP TNASGNNGVA AADYQVYRNR DVQPFTIEMK QRQEAFSEMQ RKNGFDVVSG  1560
VQQQARGVLV GRGGILQCTG VSDPVAAIKM HYAKAEQFSG QTASIIREDD SWRSKGDVSR  1620
*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550013.10.0PREDICTED: uncharacterized protein LOC107850061
TrEMBLA0A1U8ES850.0A0A1U8ES85_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y8B70.0A0A2G2Y8B7_CAPAN; uncharacterized protein LOC107850061
STRINGXP_009803598.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-167MYB family protein