PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g10100

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bZIP

Protein Properties

Length: 371aa MW: 41685.4 Da PI: 5.0758

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g10100	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	9.4e-10	85	121	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 +k rr+++NReAAr+sR+RKka++++Le+ k k L+ CA12g10100 85 DKMNRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 121 7999*************************73444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-7	81	128	No hit	No description
SMART	SM00338	6.5E-7	82	164	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.864	84	128	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-6	85	121	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-6	87	126	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-27	173	247	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MNSSTYTQFV ASKRMGICDP IQQIGMWGDF KGSSFPDTLI LEVENCLESE MPIMEKRLDN 60 ETEEPSHVTV GRSNIYEPET SKRIDKMNRR LAQNREAARK SRLRKKAYVQ QLENSKLKLL 120 QLEQELERAR QQGLYVGGGL DTSQIGCSGT ANSEIATFEM EYGHWVEEQD RQTDDLKSAL 180 NSQIGEIEMR ILVEGCLNHY FDLFRLKATA ANTDVLYLMS GTWKASAERF FLWIGGFRPS 240 ELLKVLTPHV EPLTEQQVQE VCNLTQSCQQ AEDALSQGLV KLHQILAEAV AAGTLGDGII 300 LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILSVQQ SAQGLLALGD YFKRLRSLSS 360 LWSSRTSEPA *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MNSSTYTQFV ASKRMGICDP IQQIGMWGDF KGSSFPDTLI LEVENCLESE MPIMEKRLDN  60
ETEEPSHVTV GRSNIYEPET SKRIDKMNRR LAQNREAARK SRLRKKAYVQ QLENSKLKLL  120
QLEQELERAR QQGLYVGGGL DTSQIGCSGT ANSEIATFEM EYGHWVEEQD RQTDDLKSAL  180
NSQIGEIEMR ILVEGCLNHY FDLFRLKATA ANTDVLYLMS GTWKASAERF FLWIGGFRPS  240
ELLKVLTPHV EPLTEQQVQE VCNLTQSCQQ AEDALSQGLV KLHQILAEAV AAGTLGDGII  300
LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILSVQQ SAQGLLALGD YFKRLRSLSS  360
LWSSRTSEPA *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X82544	0.0	X82544.1 S.tuberosum mRNA for leucine zipper transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016555654.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X6
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A1U8FH66	0.0	A0A1U8FH66_CAPAN; Transcription factor TGA7
TrEMBL	A0A2G2Y894	0.0	A0A2G2Y894_CAPAN; TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X6
STRING	Solyc04g054320.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-132	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]