PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g08700
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 423aa    MW: 48967.5 Da    PI: 9.6449
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g08700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-138573586
    trihelix 35 skkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                ++km+e g++r++k+C+ek+en+ k++k++k+g+++r  ++ +++++f+qle
  CA12g08700  8 GRKMAELGYNRNAKKCREKFENIYKYHKRTKDGRSGR--QNGKNYRFFEQLE 57
                589********************************98..45567******97 PP
2trihelix988.1e-31291376186
    trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k ev aLi++r++ + ++++ g++k+plWe++s+ m++ g+ r++k+Ckekwen+nk+y+++ke++kkr +e+s+tcpyf+ql+
  CA12g08700 291 RWPKAEVEALIRLRTNADLQYQDnGSSKGPLWEDISSGMKKLGYDRNAKRCKEKWENINKYYRRVKESQKKR-PEDSKTCPYFHQLD 376
                 8*********************7589*********************************************8.99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-8957No hitNo description
PROSITE profilePS500907.004284349IPR017877Myb-like domain
PfamPF138371.2E-23290378No hitNo description
CDDcd122035.28E-22290356No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGIFVYYGRK MAELGYNRNA KKCREKFENI YKYHKRTKDG RSGRQNGKNY RFFEQLELLD  60
SQSLLSSPPS NHMLINRMDA MPVPMPMPMT MIKPATSGCQ DFRMDPSQTR GFNPEFMSTS  120
TSMTSSSGKE SNGSVKKKRK LAGYFERLMK EVLDKQEDLQ NKFLEAIEKC EKDRKARDEA  180
WKMQEMARLK KEQEALAHER AISAAKDAAV IAFLQKISEQ TIQLPLPTDL PQVSQRHTEE  240
RESTESMKTV GSQENVLQLD NDKEENTLEK NIDKQEIDSA GENSFQMSSS RWPKAEVEAL  300
IRLRTNADLQ YQDNGSSKGP LWEDISSGMK KLGYDRNAKR CKEKWENINK YYRRVKESQK  360
KRPEDSKTCP YFHQLDSIYQ NKSKKQLPIS ENPSSNMKAS EILMQIINQQ QQQQQQQSEI  420
VK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140KKKRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016551172.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A2G2Y7780.0A0A2G2Y778_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000101120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-70Trihelix family protein