PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g08510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 331aa MW: 37778.5 Da PI: 6.97 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 157 | 206 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a+++a+++++g CA12g08510 157 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAASAYDEAALRFRG 206 7********.**********76....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-32 | 157 | 215 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-13 | 157 | 206 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.172 | 157 | 214 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 157 | 215 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-37 | 157 | 220 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 158 | 169 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.77E-16 | 165 | 216 | No hit | No description |
PRINTS | PR00367 | 1.5E-11 | 180 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MCNIYHKVAN SRDFISSSSS SSRNVFETMF WGNINREEEM SVMVSALTHV VVGQDHRVMN 60 PLQEQTEKIG AADHNDNLFS WGVGEKRRRE EEQMQQMSLL IQMELCYIGD ESTSIRTITS 120 STPTTEATFI YTTSTHHDNQ NSSSDQSNYN NNQPRRRYRG VRQRPWGKWA AEIRDPYKAT 180 RVWLGTFDTA EAAASAYDEA ALRFRGSKAK LNFPENVRLL PSSIQQPPNN TLYSVSSSPE 240 PIVHTSSQHR SNFTGHPSRD EDPIVHTSSM YRSNFTGYSS RDEEPIGYIS SPYHSNFIHH 300 TSRDEPIIHT TYDHRVQQGA YFPLVHFSGR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-24 | 156 | 217 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 2e-59 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552321.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
Swissprot | Q9FGF8 | 4e-33 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A2G2Y727 | 0.0 | A0A2G2Y727_CAPAN; Ethylene-responsive transcription factor ABR1 | ||||
STRING | PGSC0003DMT400050718 | 1e-113 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 7e-22 | ERF family protein |
Publications ? help Back to Top | |||
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