PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g08510
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 331aa    MW: 37778.5 Da    PI: 6.97
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g08510genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20157206255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  CA12g08510 157 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAASAYDEAALRFRG 206
                 7********.**********76....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-32157215IPR001471AP2/ERF domain
PfamPF008473.3E-13157206IPR001471AP2/ERF domain
PROSITE profilePS5103225.172157214IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22157215IPR016177DNA-binding domain
SMARTSM003802.0E-37157220IPR001471AP2/ERF domain
PRINTSPR003671.5E-11158169IPR001471AP2/ERF domain
CDDcd000184.77E-16165216No hitNo description
PRINTSPR003671.5E-11180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MCNIYHKVAN SRDFISSSSS SSRNVFETMF WGNINREEEM SVMVSALTHV VVGQDHRVMN  60
PLQEQTEKIG AADHNDNLFS WGVGEKRRRE EEQMQQMSLL IQMELCYIGD ESTSIRTITS  120
STPTTEATFI YTTSTHHDNQ NSSSDQSNYN NNQPRRRYRG VRQRPWGKWA AEIRDPYKAT  180
RVWLGTFDTA EAAASAYDEA ALRFRGSKAK LNFPENVRLL PSSIQQPPNN TLYSVSSSPE  240
PIVHTSSQHR SNFTGHPSRD EDPIVHTSSM YRSNFTGYSS RDEEPIGYIS SPYHSNFIHH  300
TSRDEPIIHT TYDHRVQQGA YFPLVHFSGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-24156217163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754432e-59HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552321.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
SwissprotQ9FGF84e-33ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLA0A2G2Y7270.0A0A2G2Y727_CAPAN; Ethylene-responsive transcription factor ABR1
STRINGPGSC0003DMT4000507181e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.17e-22ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]