PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g08090

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ERF

Protein Properties

Length: 196aa MW: 22262.9 Da PI: 4.6805

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g08090	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.8	1.7e-20	61	110	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd s+++ + r++lg+f+taeeAa a+++a+ +l+g CA12g08090 61 YRGVRRRP-WGKYAAEIRD-STRN-SVRVWLGTFDTAEEAALAYDQAAYALHG 110 9*****.******.3433.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	5.5E-32	60	125	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.827	60	118	IPR001471	AP2/ERF domain
Pfam	PF00847	2.0E-14	60	110	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-29	60	119	IPR001471	AP2/ERF domain
CDD	cd00018	9.50E-29	61	118	No hit	No description
SuperFamily	SSF54171	6.21E-23	61	120	IPR016177	DNA-binding domain
PRINTS	PR00367	1.9E-11	61	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-11	84	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDSSSFSSYS YSQYHHLGFN ENDTEDMLLL NVLSEAGENS SNNLHVDQEI NEGSLKEVAS 60 YRGVRRRPWG KYAAEIRDST RNSVRVWLGT FDTAEEAALA YDQAAYALHG TMAVLNYPME 120 IVYRSLMEME CRFEEGCSPV LALKKWHSRM KKTNKKKEQK EMSFENVLVL EDLGADYLEE 180 ILRLSEGCCD PSISC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-28	51	120	5	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-154	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016549957.1	1e-145	PREDICTED: ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	3e-62	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A1U8ERV1	1e-143	A0A1U8ERV1_CAPAN; Ethylene-responsive transcription factor 1B
TrEMBL	A0A2G2Y6M8	1e-143	A0A2G2Y6M8_CAPAN; ethylene-responsive transcription factor 1B-like
TrEMBL	A0A2G3B1M1	1e-143	A0A2G3B1M1_CAPCH; Ethylene-responsive transcription factor 1B
STRING	XP_009589439.1	1e-107	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	9e-45	ethylene response factor 1

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]