PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g07920
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 585aa    MW: 65104.7 Da    PI: 4.7271
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g07920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.95.1e-4641311128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtd el+++yLk+k+ gkkl + e i+e++iy+v PwdLp k ++k+++ ewyfF++r++kya+g r nrat++gyWk+tgkd+ v+  ++
  CA12g07920   4 LAPGFRFHPTDVELIMYYLKRKIMGKKLLF-EGITELNIYRVSPWDLPgKcCYKSKDLEWYFFCPRERKYASGARMNRATETGYWKTTGKDRLVTY-DE 100
                 579************************888.78***************6545666777*************************************9.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 + vg  ktLvf+ g+ p+g++tdWv+he+++
  CA12g07920 101 KIVGSVKTLVFHLGHPPRGQRTDWVIHEFKF 131
                 9****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-563154IPR003441NAC domain
PROSITE profilePS5100553.1934154IPR003441NAC domain
PfamPF023651.1E-236130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MARLAPGFRF HPTDVELIMY YLKRKIMGKK LLFEGITELN IYRVSPWDLP GKCCYKSKDL  60
EWYFFCPRER KYASGARMNR ATETGYWKTT GKDRLVTYDE KIVGSVKTLV FHLGHPPRGQ  120
RTDWVIHEFK FEDKESIDAG FSQDSYVLCK VFQKSGPGPK NGAQYGAPFI EEDWDDDKIP  180
AEPCPLDVFP APPGRPDSRS KSVVTGVVDP GSTSDWPSSE LSLSPIRSSI QRSPLDEPDD  240
EELPGEPKPA NVSPISRMPS DQLDDEGVHG QSNLSNIFSP LPILPEGHCM VKPGPGPSND  300
QMCTNEMPLD EQDDEIFSLL APFTEDTSLL SAGDETKQNL ENFNQDVNAP PATLTDGNDI  360
FAGLGGIEYW AGGGQPGSDL FASDGADYSF NPMILTQDSA YMELNDLDIP LDHSADTIGT  420
GQLVASNFCA PYNSNIGLQQ PCFGSNSMGI VQDFGEHNLP MLPESYTHSQ QVNHSDMVRS  480
CSSSCVEWKL SFLSFSVSLL IGLVNCRFTI FRTTHARVIM LRLISVLALT RNQKRVDSMP  540
KIWKEVDLIF LMTILLGATS VHVRSVCLRK CNNKNEILDI LWWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-40416017171NO APICAL MERISTEM PROTEIN
1ut4_B2e-40416017171NO APICAL MERISTEM PROTEIN
1ut7_A2e-40416017171NO APICAL MERISTEM PROTEIN
1ut7_B2e-40416017171NO APICAL MERISTEM PROTEIN
3swm_A3e-40416020174NAC domain-containing protein 19
3swm_B3e-40416020174NAC domain-containing protein 19
3swm_C3e-40416020174NAC domain-containing protein 19
3swm_D3e-40416020174NAC domain-containing protein 19
3swp_A3e-40416020174NAC domain-containing protein 19
3swp_B3e-40416020174NAC domain-containing protein 19
3swp_C3e-40416020174NAC domain-containing protein 19
3swp_D3e-40416020174NAC domain-containing protein 19
4dul_A2e-40416017171NAC domain-containing protein 19
4dul_B2e-40416017171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550711.10.0PREDICTED: NAC domain-containing protein 82-like isoform X1
RefseqXP_016550712.10.0PREDICTED: NAC domain-containing protein 82-like isoform X1
RefseqXP_016550713.10.0PREDICTED: NAC domain-containing protein 82-like isoform X1
TrEMBLA0A2G2VFL50.0A0A2G2VFL5_CAPBA; NAC domain-containing protein 16
STRINGPGSC0003DMT4000737790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-79NAC domain containing protein 82