PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g06300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29316.9 Da PI: 9.3002 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.1 | 1.3e-19 | 39 | 86 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtf kRr g++KKA+EL++LC++e+a+i+fs k++ + CA12g06300 39 KIEVKNHLQVTFLKRRSGLFKKASELCTLCGVEIAIIVFSLARKVFSF 86 58888899********************************99998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.119 | 30 | 90 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.3E-27 | 30 | 89 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-24 | 30 | 104 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-15 | 32 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-21 | 39 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-15 | 52 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-15 | 67 | 88 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSIQNHKNIL SLILFLQLIL SNMAKKPSSM GHQKIKIAKI EVKNHLQVTF LKRRSGLFKK 60 ASELCTLCGV EIAIIVFSLA RKVFSFGHPN VESLIDRFLS RNNTNNNPIA NNSLQLVEAH 120 RNANVCGLNL QLTQILGEVE IEKKRGESLD QMRKTSQSQC WWEAPTSQLD LQELEQLKDS 180 MEALKKYVTN QASKFMVNEI SNSSTFFGDN GNGIFDNYDI KPPRTIAFVL IQLHFFNSFF 240 LCLSPSLFLD FHLESRH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240204 | 0.0 | AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581987.1 | 1e-129 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 7e-56 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2G2Y5N7 | 0.0 | A0A2G2Y5N7_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094816 | 1e-114 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-50 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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