PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g04970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 530aa MW: 59144.7 Da PI: 4.5018 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.8 | 5e-54 | 6 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 l+pGfrFhPtdeelv +yL++k++g++++ + i+e+diykvePwdLp +++k+++ ewyfFs dkky +g r+nrat++gyWk+tgkd++v++ k+ CA12g04970 6 LAPGFRFHPTDEELVRYYLRRKIHGRPFKS-DPISEIDIYKVEPWDLPgmSRLKTRDLEWYFFSVLDKKYGNGARTNRATEKGYWKTTGKDRAVHRDKS 103 579**************************9.89***************6347788888***************************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLv+++grap+g++t+Wvmheyrl CA12g04970 104 HVVGMKKTLVYHSGRAPRGQRTNWVMHEYRL 134 *****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-62 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.756 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-28 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MASKSLAPGF RFHPTDEELV RYYLRRKIHG RPFKSDPISE IDIYKVEPWD LPGMSRLKTR 60 DLEWYFFSVL DKKYGNGART NRATEKGYWK TTGKDRAVHR DKSHVVGMKK TLVYHSGRAP 120 RGQRTNWVMH EYRLIDEELK RVGIPQDAFV LCRVFQKSGA GPKNGEQYGA PFIDEEWEED 180 ELQLLPKDEA AEEFVFGDDI YLDANELDQI LGTGTAVAAL PLDYSYGENG STEETNGSSD 240 AQNWLQQPDE LKPIDLAVPK NFGADQVNHE YIGESSQNMN IEDGDYLLNE PIENVSKDLQ 300 FNGEAFLEAN DLSNPVEVDS SGYDMLKEYL TYFDANDDFQ NMSFDPSVLF GNDDQISDQA 360 LLAEKNIGEV TQQLNTPNEG LGEDKNGFAS ASSKLAPTKF GSDYQYPYMK RASQMLGNIQ 420 APPAFASEFP TEDATLRLNS LAWSASSVQL TAGLHMSAGG NGTGWPLGKH GDYNIILSFG 480 LLRGGSDDSG SIHPGKTTST VSRGWFYYLF FSFLMLSISF RIGTIICSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-45 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-45 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-45 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-45 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-45 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-45 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-45 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-45 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-45 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-45 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-45 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-45 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-45 | 5 | 163 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-45 | 5 | 163 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013747 | 0.0 | BT013747.1 Lycopersicon esculentum clone 132610F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016550126.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | A0A2G2Y3K2 | 0.0 | A0A2G2Y3K2_CAPAN; NAC domain-containing protein 16 | ||||
STRING | XP_009599412.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3141 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 1e-129 | NAC domain containing protein 53 |