PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g04970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 530aa    MW: 59144.7 Da    PI: 4.5018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g04970genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85e-5461341128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtdeelv +yL++k++g++++  + i+e+diykvePwdLp  +++k+++ ewyfFs  dkky +g r+nrat++gyWk+tgkd++v++ k+
  CA12g04970   6 LAPGFRFHPTDEELVRYYLRRKIHGRPFKS-DPISEIDIYKVEPWDLPgmSRLKTRDLEWYFFSVLDKKYGNGARTNRATEKGYWKTTGKDRAVHRDKS 103
                 579**************************9.89***************6347788888***************************************** PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kktLv+++grap+g++t+Wvmheyrl
  CA12g04970 104 HVVGMKKTLVYHSGRAPRGQRTNWVMHEYRL 134
                 *****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-624157IPR003441NAC domain
PROSITE profilePS5100558.7566157IPR003441NAC domain
PfamPF023652.8E-288134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MASKSLAPGF RFHPTDEELV RYYLRRKIHG RPFKSDPISE IDIYKVEPWD LPGMSRLKTR  60
DLEWYFFSVL DKKYGNGART NRATEKGYWK TTGKDRAVHR DKSHVVGMKK TLVYHSGRAP  120
RGQRTNWVMH EYRLIDEELK RVGIPQDAFV LCRVFQKSGA GPKNGEQYGA PFIDEEWEED  180
ELQLLPKDEA AEEFVFGDDI YLDANELDQI LGTGTAVAAL PLDYSYGENG STEETNGSSD  240
AQNWLQQPDE LKPIDLAVPK NFGADQVNHE YIGESSQNMN IEDGDYLLNE PIENVSKDLQ  300
FNGEAFLEAN DLSNPVEVDS SGYDMLKEYL TYFDANDDFQ NMSFDPSVLF GNDDQISDQA  360
LLAEKNIGEV TQQLNTPNEG LGEDKNGFAS ASSKLAPTKF GSDYQYPYMK RASQMLGNIQ  420
APPAFASEFP TEDATLRLNS LAWSASSVQL TAGLHMSAGG NGTGWPLGKH GDYNIILSFG  480
LLRGGSDDSG SIHPGKTTST VSRGWFYYLF FSFLMLSISF RIGTIICSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-45516316171NO APICAL MERISTEM PROTEIN
1ut4_B7e-45516316171NO APICAL MERISTEM PROTEIN
1ut7_A7e-45516316171NO APICAL MERISTEM PROTEIN
1ut7_B7e-45516316171NO APICAL MERISTEM PROTEIN
3swm_A7e-45516319174NAC domain-containing protein 19
3swm_B7e-45516319174NAC domain-containing protein 19
3swm_C7e-45516319174NAC domain-containing protein 19
3swm_D7e-45516319174NAC domain-containing protein 19
3swp_A7e-45516319174NAC domain-containing protein 19
3swp_B7e-45516319174NAC domain-containing protein 19
3swp_C7e-45516319174NAC domain-containing protein 19
3swp_D7e-45516319174NAC domain-containing protein 19
4dul_A7e-45516316171NAC domain-containing protein 19
4dul_B7e-45516316171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137470.0BT013747.1 Lycopersicon esculentum clone 132610F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550126.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A2G2Y3K20.0A0A2G2Y3K2_CAPAN; NAC domain-containing protein 16
STRINGXP_009599412.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-129NAC domain containing protein 53