PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g04950
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 383aa    MW: 43109.3 Da    PI: 5.1389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g04950genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.6e-52111381128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtdeelv +yL++k+ +k++++ ++++e+d+yk+ePw+L +  ++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v + k+
  CA12g04950  11 LAPGFRFHPTDEELVRYYLRRKACAKPFRF-QAVAEIDVYKSEPWELAEysSLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRPVRH-KS 107
                 579*************************99.88**************84346777888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++g+kktLvf++grap+g++t+Wvmheyrl
  CA12g04950 108 QTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 138
                 9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-629161IPR003441NAC domain
PROSITE profilePS5100557.89211161IPR003441NAC domain
PfamPF023653.3E-2813138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
VVPPPPPPTS LAPGFRFHPT DEELVRYYLR RKACAKPFRF QAVAEIDVYK SEPWELAEYS  60
SLKTRDLEWY FFSPVDRKYG NGSRLNRATG KGYWKATGKD RPVRHKSQTI GMKKTLVFHS  120
GRAPDGKRTN WVMHEYRLAD EELDRAGVVQ DAFVLCRIFQ KSGLGPPNGD RYAPFIEEEW  180
DDDTALMVPG GEAEDDVGNG DEAQVEGHDL DQQDALGKAP CQSENLAEPR PLTFVCKRER  240
SEELEPLSLA QSKRSKHDDP SSSHANGSED STTSQQDPPT LMMTTSYSPA LLTFPVLEPP  300
EPKESQPSNP LTFDSSNLEK SVPPGYLRFI SNLENQILNV SMEKETARIE VMRAQAMINV  360
LQSRIDLLNK ENEDLRKLVR NG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51516111165NO APICAL MERISTEM PROTEIN
1ut4_B2e-51516111165NO APICAL MERISTEM PROTEIN
1ut7_A2e-51516111165NO APICAL MERISTEM PROTEIN
1ut7_B2e-51516111165NO APICAL MERISTEM PROTEIN
3swm_A2e-51516114168NAC domain-containing protein 19
3swm_B2e-51516114168NAC domain-containing protein 19
3swm_C2e-51516114168NAC domain-containing protein 19
3swm_D2e-51516114168NAC domain-containing protein 19
3swp_A2e-51516114168NAC domain-containing protein 19
3swp_B2e-51516114168NAC domain-containing protein 19
3swp_C2e-51516114168NAC domain-containing protein 19
3swp_D2e-51516114168NAC domain-containing protein 19
4dul_A2e-51516111165NAC domain-containing protein 19
4dul_B2e-51516111165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4029280.0JX402928.1 Capsicum annuum NAC domain class transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311599.10.0NAC domain-containing protein 78-like
SwissprotQ9SQY01e-107NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A1U8ESK50.0A0A1U8ESK5_CAPAN; NAC domain-containing protein 78-like
TrEMBLS4T6W40.0S4T6W4_CAPAN; NAC domain class transcription factor
STRINGXP_009619467.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.28e-97NAC domain containing protein 50
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]