PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g02780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 597aa MW: 64897.4 Da PI: 4.7443 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 449.1 | 3e-137 | 212 | 582 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 lv++L++cAeav++++++la+al+ ++ la ++ +m+++a+yf+eALa+r+++ ++p+++ e++ ++l++ f+e++P+lkf+h+taN CA12g02780 212 LVHTLMACAEAVQQENFNLADALVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IHPQDSIESSYNDVLQM--HFYETCPYLKFAHFTAN 300 689****************************************************........66777765555666554..5**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaIlea+ ++++vH++Df+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+dl+ ++L+++p CA12g02780 301 QAILEAFTNCNKVHVVDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDTLQQVGWKLAQLADTIGVEFEFRGFVANSLADLDASMLDIRP 399 *************************************************************************************************** PP GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres........eerikvEr 287 Ea+aVn+v++lhrll++++++e+ vL+ +++++Pk+v++veqea+hn++ F +rf eal+yys++fdsle++ ++++ +++ +++ CA12g02780 400 seTEAVAVNSVFELHRLLARQGAIEK----VLDSIRQMNPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSSSSHNgitqspvtNQDLLMSE 494 999*******************9999....*********************************************9995554455555666999***** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +lgr+i+nvva eg++r+erhe+l++Wr+rl++aGF pv+l+++a kqa++ll+ ++ +dgyrv+e++g+l+lgW++rpL+++SaW+ CA12g02780 495 IYLGRQICNVVAYEGSDRVERHESLGQWRARLSSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVDENDGCLMLGWHTRPLIATSAWQ 582 ***************************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 2.0E-35 | 32 | 105 | No hit | No description |
Pfam | PF12041 | 3.4E-35 | 32 | 98 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 67.458 | 186 | 561 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-134 | 212 | 582 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MKRDRDREKG SSSKGKNWAS VEEEEQPDAG MDELLAVLGY KVKSSDMAEV AQKLEQLEMA 60 MGTSMEDGIS HLSTDTVHKN PSDLSGWVQS MLSGLNSTSI SSNFGMSSSE NQLIVSGDGG 120 GGSCSSIIDF SRGNEEKKTT TAISDDDLRA IPGGAVFSSG RNRNEVDEES NKRQRSSFCS 180 SGGSNSSSGG NSLTDSARPV VLVDSQETGV RLVHTLMACA EAVQQENFNL ADALVRHIGI 240 LAVSQSGAMR KVATYFAEAL ARRIYKIHPQ DSIESSYNDV LQMHFYETCP YLKFAHFTAN 300 QAILEAFTNC NKVHVVDFSL KQGMQWPALM QALALRPGGP PAFRLTGIGP PQPDNTDTLQ 360 QVGWKLAQLA DTIGVEFEFR GFVANSLADL DASMLDIRPS ETEAVAVNSV FELHRLLARQ 420 GAIEKVLDSI RQMNPKIVTL VEQEANHNAG VFIDRFNEAL HYYSTMFDSL ESSSSSHNGI 480 TQSPVTNQDL LMSEIYLGRQ ICNVVAYEGS DRVERHESLG QWRARLSSAG FDPVHLGSNA 540 FKQASMLLAL FAGGDGYRVD ENDGCLMLGW HTRPLIATSA WQIAAEDDGA GEVELH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-66 | 219 | 581 | 26 | 378 | Protein SCARECROW |
5b3h_A | 6e-66 | 219 | 581 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-66 | 219 | 581 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016572499.1 | 0.0 | PREDICTED: DELLA protein GAI-like isoform X1 | ||||
Refseq | XP_016572500.1 | 0.0 | PREDICTED: DELLA protein GAI-like isoform X2 | ||||
Swissprot | Q7Y1B6 | 0.0 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A1U8GMV1 | 0.0 | A0A1U8GMV1_CAPAN; DELLA protein GAI | ||||
TrEMBL | A0A2G2Y4R2 | 0.0 | A0A2G2Y4R2_CAPAN; DELLA protein GAI-like isoform X1 | ||||
STRING | PGSC0003DMT400040589 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2126 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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