PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g01450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | G2-like | ||||||||
Protein Properties | Length: 359aa MW: 40343.9 Da PI: 8.6651 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.2 | 3.2e-32 | 269 | 322 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ CA12g01450 269 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 322 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-15 | 266 | 322 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 267 | 322 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-24 | 269 | 322 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.0E-7 | 270 | 321 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MPLEGAFIET PSSTKPIPDL SLNISPPNSL DHHHNHQSGX RCCVSEVGEN HERLVTEFSK 60 TTGSSNCLTE LSLAHPTNTT TTTITTTVTN AITNDDMTTT TRRGTFLDHL PRNPYYNNHQ 120 HQYQNYSHMV QPMNQINHGV SSLDVSDGLC PIKGIPVYNH NRSFPFLAST LDKEKDPKMC 180 FYPSPSSSSS SSCSPSPYFN SRFNGISSSA YHMPHHHHHH HPLPYHHHSQ YGHVGGLGHS 240 HHDNIANSHS LMRSRFLPKL PTKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL 300 ELMDVKDLTL AHVKSHLQMY RTVKTTDKPA VSSGKLSCFN SFTFLPFFTF VDNNIQFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-144 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552242.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A2G2Y570 | 0.0 | A0A2G2Y570_CAPAN; Putative transcription factor KAN2 | ||||
STRING | PGSC0003DMT400034663 | 1e-160 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2468 | 23 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 2e-53 | G2-like family protein |