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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | CA12g00830 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 717aa MW: 81574.4 Da PI: 6.2453 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 55.1 | 1.3e-17 | 26 | 77 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ eq+++Le++F+++++p++++r +L+k+ gL+ +q+k+WFqN+R++ k
CA12g00830 26 HRHNVEQIQQLEAFFKQCPHPDENQRNQLSKEAGLDPKQIKFWFQNKRTQTK 77
467889*******************************************988 PP
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| 2 | START | 102.6 | 6.7e-33 | 238 | 457 | 3 | 205 |
HHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
START 3 aeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85
+ a++e +++ +ep+Wv+ s +n++ v + + + e +++sgvv m++ +l + ++d +W ++++ +a e
CA12g00830 238 INGAMEEMMQLLPMNEPFWVTTSdgrcllNRDNYERVFSHPYH--RpyrsstAQFESSKESGVVSMPAIELIQNFVDPV-KWMNMFPsivqQARGFELP 333
567999*****************99977766666666666533..1467777999************************.*******887744444444 PP
CTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS.XXHH CS
START 86 ssg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr.lphw 179
++ g +q m+ +l lsplv Rdf+f+R++r+l + +w+ vdvS d ++ + + + + ++pSg++i++++ng s vtw+ehv +++ ++h
CA12g00830 334 DTEhlgGSIQMMQEKLHILSPLVEvRDFYFIRCCRRLDQTTWIMVDVSHDILKEFQ-NGGPIYTWKYPSGCVIQDMGNGQSMVTWIEHVQIDDKnQVHR 431
444777******************************************99999888.67888889**************************875277** PP
HHHHHHHHHHHHHHHHHHHHTXXXXX CS
START 180 llrslvksglaegaktwvatlqrqce 205
++r lv ++ +gak+w +lqr e
CA12g00830 432 IFRDLVYGRQTFGAKRWIVALQRMSE 457
**********************9877 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 4.4E-18 | 8 | 73 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 3.68E-17 | 11 | 79 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 16.422 | 19 | 79 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 2.5E-16 | 19 | 83 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 5.80E-16 | 20 | 79 | No hit | No description |
| Pfam | PF00046 | 4.1E-15 | 26 | 77 | IPR001356 | Homeobox domain |
| PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
| PROSITE profile | PS50848 | 31.244 | 227 | 461 | IPR002913 | START domain |
| CDD | cd08875 | 3.42E-67 | 231 | 457 | No hit | No description |
| SuperFamily | SSF55961 | 7.0E-23 | 235 | 458 | No hit | No description |
| SMART | SM00234 | 2.1E-10 | 236 | 458 | IPR002913 | START domain |
| Pfam | PF01852 | 6.0E-26 | 239 | 457 | IPR002913 | START domain |
| Gene3D | G3DSA:3.30.530.20 | 4.4E-5 | 336 | 424 | IPR023393 | START-like domain |
| SuperFamily | SSF55961 | 6.18E-5 | 481 | 678 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 717 aa Download sequence Send to blast |
MTDSEEEHVG ESSNSQKKTR RKRQCHRHNV EQIQQLEAFF KQCPHPDENQ RNQLSKEAGL 60 DPKQIKFWFQ NKRTQTKTQT ERSDNSTLRA ENERFHCENM AMKEALKSVT CPRCDGPPIG 120 EEERTRNIEI LKMENQNLKD EHERVANLIS RVQGRSFLTN QNLALPNATL RSPSNSSDES 180 LLSQNICGSP IEFPSAQENN NNRNSINSNN IPMMSQIGQE NYQILHDIRE KAIVTEVING 240 AMEEMMQLLP MNEPFWVTTS DGRCLLNRDN YERVFSHPYH RPYRSSTAQF ESSKESGVVS 300 MPAIELIQNF VDPVKWMNMF PSIVQQARGF ELPDTEHLGG SIQMMQEKLH ILSPLVEVRD 360 FYFIRCCRRL DQTTWIMVDV SHDILKEFQN GGPIYTWKYP SGCVIQDMGN GQSMVTWIEH 420 VQIDDKNQVH RIFRDLVYGR QTFGAKRWIV ALQRMSERCN FAVAATSPTS HDLNIGVVTD 480 PEGVKNVMQT SQRMVKRFFE ILSMTDRLDF LTSSKLNSGD RVSIRTNEEI TLSPKGWIVT 540 AATSLCLPLS FQTVFDFFKD DKTRHEVCIE PLYNNVVYSD VLLVVTMKYC YREDDNLTWI 600 NMLMIQESNI DEMGAFIIYA PIDLPTVTSV INGGDATKVS ILPSGITISP DGQLASNRKN 660 TGNAQDGSIL TVAFQILISG DNYPMNQQKH MDAVASVHGL LSSKVLKVKA ALGCSD* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016549855.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC8-like | ||||
| TrEMBL | A0A1U8F2I3 | 0.0 | A0A1U8F2I3_CAPAN; homeobox-leucine zipper protein ROC8-like | ||||
| STRING | Solyc11g011940.1.1 | 0.0 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1021 | 17 | 32 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G03260.1 | 1e-156 | homeodomain GLABROUS 8 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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