PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g00700
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 533aa    MW: 59756.6 Da    PI: 5.6196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g00700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.67.1e-1261635322374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +elL +c eavs+ d + a+ l+  l++++s +g+pm+Rl ay++e+L+arl++++s +yk+l+++e +    se l+++++ ++++P++kf+++ aN 
  CA12g00700 163 KELLDACSEAVSDADISTAEVLMDVLEQRVSVSGEPMERLGAYVLEGLRARLLSTGSIIYKKLKCEEPT---GSELLSYMQVIYNMCPYYKFAYMSANV 258
                 78999***************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  I ea+ +e+r+HiiDf+i qG QW+ Ll+ La Rp+gpp +RiTgv+++es   +   l+ +gerLa++A+++gvpfef+  +a +  +++l++L+v+
  CA12g00700 259 VIREAMMNENRIHIIDFQIAQGSQWIFLLHDLAHRPGGPPFVRITGVDDSESAyaRGGGLQIVGERLAEVAKSCGVPFEFHG-AALSGCEVQLSNLQVR 356
                 *************************************************998899999************************.8999************ PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                  gE+laVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl rf e+l+yy+a+f+s++a  pr+++eri+ E+++++r++vn
  CA12g00700 357 YGEVLAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTAMFESIDAARPRDNKERISAEEHCVARDVVN 455
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++acega+r+erhe ++kWr rl++aGF++ +ls ++ ++++ +l++++   yr  e++g+l+lgWk+r+L + SaWr
  CA12g00700 456 IIACEGADRVERHELFGKWRLRLMMAGFTQCQLSPSVGETINDMLKEYS-PHYRYAESEGALYLGWKNRALATSSAWR 532
                 *************************************************.55*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.088136513IPR005202Transcription factor GRAS
PfamPF035142.4E-123163532IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MQASERPHMC GSVHALYNQP MQQCAPYRVF KNNCKDSHGS RTQLSFQAQN EQFFTLDSSP  60
ATDYIVYDSP PALSISSNRS PFSPQCSQSY MSDNACGSPL SRYSGVDDGD LRHVLRELEN  120
KLLGPESDTD NSSSWSFNDV VIKPSSLTRW NRVLDLAPSL NLKELLDACS EAVSDADIST  180
AEVLMDVLEQ RVSVSGEPME RLGAYVLEGL RARLLSTGSI IYKKLKCEEP TGSELLSYMQ  240
VIYNMCPYYK FAYMSANVVI REAMMNENRI HIIDFQIAQG SQWIFLLHDL AHRPGGPPFV  300
RITGVDDSES AYARGGGLQI VGERLAEVAK SCGVPFEFHG AALSGCEVQL SNLQVRYGEV  360
LAVNFPYMLH HMPDESVSTI NHRDRLLRLV KSLSPKIVTL VEQESNTNTA PFLPRFRETL  420
DYYTAMFESI DAARPRDNKE RISAEEHCVA RDVVNIIACE GADRVERHEL FGKWRLRLMM  480
AGFTQCQLSP SVGETINDML KEYSPHYRYA ESEGALYLGW KNRALATSSA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5816953126378Protein SCARECROW
5b3h_A3e-5816953125377Protein SCARECROW
5b3h_D3e-5816953125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016551135.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1U8F6020.0A0A1U8F602_CAPAN; Scarecrow-like protein 13
TrEMBLA0A2G2Y4E00.0A0A2G2Y4E0_CAPAN; scarecrow-like protein 13
STRINGSolyc11g012510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13