PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g20320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 996aa MW: 109780 Da PI: 4.766 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 1e-18 | 45 | 89 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEde+l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l CA11g20320 45 KWTPEEDEILRQAVQQFKGKSWKKIAECFK-DRTDVQCLHRWQKVL 89 8****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 95 | 141 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+++v+ +G+ W+ Ia+++ gR +kqc++rw+++l CA11g20320 95 KGSWSKEEDDKLIELVNIHGPQKWSNIAQELA-GRIGKQCRERWHNHL 141 799*****************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 54.5 | 2.7e-17 | 147 | 189 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ lv+a++ +G++ W+ I+++++ gR+++ +k++w+ CA11g20320 147 KEAWTEEEELTLVRAHQAYGNK-WAEISKYLP-GRSDNAIKNHWH 189 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.34 | 38 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-15 | 38 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 42 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-16 | 45 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 45 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-14 | 45 | 89 | No hit | No description |
PROSITE profile | PS51294 | 31.637 | 90 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-30 | 92 | 188 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-17 | 94 | 143 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.24E-15 | 97 | 141 | No hit | No description |
Pfam | PF13921 | 1.9E-17 | 98 | 156 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-26 | 100 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.217 | 146 | 196 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 146 | 194 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 149 | 196 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-12 | 149 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 996 aa Download sequence Send to blast |
MLDYQDLSLS QVTMESDETS KPPSDDISSR PLHGRTSGPK RRSVKWTPEE DEILRQAVQQ 60 FKGKSWKKIA ECFKDRTDVQ CLHRWQKVLD PELVKGSWSK EEDDKLIELV NIHGPQKWSN 120 IAQELAGRIG KQCRERWHNH LNPEIKKEAW TEEEELTLVR AHQAYGNKWA EISKYLPGRS 180 DNAIKNHWHS SVKKKLASGL LAQSPALPNV NHQNQSTASS SMKLQETSED ESVHKEGAEV 240 EEVTECSQGS TLAGCPQSTS DLGNTFMHIR ENDAMLEESI HKKDASSGAA PCPRNSASAF 300 QDVSCSMLNV PSDLVDSKFL EYMFSHDGDN STERDWQFNM DDFPGFIEES SGHYMHCSND 360 NENHAMVADP LQTAMGSGAT SNAANMVEGP YKPNEMFDGC RIVYPEAAIS QCSPSETGVN 420 GTGEPADCLI YQSSNYQIPE EGNMAPPNCN ALSFDDVEAS THQQFSVPSH FSSEDRSLVF 480 GIASDQFHYP PLENSVLESF TSRCDDFICP SEFGSPSNDN GIDNAVLKDL PDHTKDSSRL 540 EEQKDGGALC YEPPRFPSLD VPFLYCDLIQ SGSNTQQEYS PLGIRHLMMS PANCLTPLRL 600 WNSPSGDDSP NAILKSAAKT FTGTPSIVKK RQRHLVSPLS EKRCEKKLES DLNQESFSNM 660 ATELSRVGDM FNEPANEKPS TEDKENLHPS SEDGRKEQGD GVTGLSCIEN SERQLDGGGA 720 HYHKDPNSES AGANDALGKV KQPPGVLVER SSNDMLVSPD RFLIKCDRAT SLSNKALDNQ 780 YAGQLEAASN QVNVSSSFET SFLSVFCSPD ILGKCRSSVV KATSMQSTTS TALVNTAENS 840 EKGFGAETSN IFGEAPLKRS TESPSAWKSP WSLNSFLPSP RYDTELTFED FAPFMSPGER 900 SYDAIGLMKQ LSEQTAPSIA DARQILGSET PETILSKRTK QQKADEDCAL LASNAMSERR 960 TLDFSECVTP PRKGKETTKF GSISSPSSYL LKCCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-65 | 22 | 196 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-65 | 22 | 196 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016546938.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A2G2YI29 | 0.0 | A0A2G2YI29_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400047825 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-158 | myb domain protein 3r-4 |