PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g19090

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 265aa MW: 30331.1 Da PI: 4.6008

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g19090	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.3	7.3e-10	130	157	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r+ C++G++C++aHg+ CA11g19090 130 WKTALCSYFRRNEgSCSHGESCRYAHGE 157 8********867**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	9.5E-14	124	161	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-7	127	162	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.713	129	158	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-5	129	157	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-7	130	157	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MSTETVNPKF NGNDSPEKLS SEFHGHDSSE KLNDEFNGKD SSEKLNAELN VQDSSEKLND 60 EFNGNDSSES PKPQLNVQDS SEQLNAKLNS QDISEKLNAE SNEQDSSEKK VNLPEKRKRE 120 ETETHTNPLW KTALCSYFRR NEGSCSHGES CRYAHGESEL RIRPDNTWDP TSQRAKKIAR 180 IEFEEEEDEE QVKCNDVMMP DALDDDDGQR SSSSGLSKCL VNLPMKWNSD NLRCFLKEHV 240 RFLINEMFAY IKYTFPIRFG VHFM*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC231670	2e-43	AC231670.1 Solanum tuberosum chromosome 11 clone RH121D01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016547449.1	1e-130	PREDICTED: zinc finger CCCH domain-containing protein 24
Swissprot	Q8L7S3	1e-31	C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A2G2YHU2	1e-165	A0A2G2YHU2_CAPAN; Zinc finger CCCH domain-containing protein 24
STRING	Solyc11g069340.1.1	1e-68	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8074	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	2e-27	C3H family protein

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]