PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g18790
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TALE
Protein Properties Length: 458aa    MW: 50487.8 Da    PI: 9.4288
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g18790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-092592912254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 ++yp+ +++  LA+++gLt +qV++WF N R +
  CA11g18790 259 HPYPTDTDKHMLASQTGLTRNQVSNWFINARVR 291
                 89*****************************87 PP
2BELL106.51.7e-34109176572
        BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   +kkakL+ ++ee++krYkqy++q+q+v+ssFe+vagl +a+pY+slAlk++S+hF++L++ai++++
  CA11g18790 109 YLQKKAKLIFMQEEICKRYKQYHQQMQMVVSSFETVAGLSAATPYISLALKTVSQHFKSLRNAIMDHL 176
                 568*************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.8E-4728174IPR006563POX domain
PfamPF075263.2E-4133173IPR006563POX domain
PROSITE profilePS5007111.823232295IPR001356Homeobox domain
SMARTSM003899.4E-9235299IPR001356Homeobox domain
CDDcd000865.75E-11235296No hitNo description
SuperFamilySSF466892.4E-17237302IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-28238299IPR009057Homeodomain-like
PfamPF059203.9E-18252291IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDKRNNASIV PDNFAIAHRS AVPLGPFTGY ATILKSSKFL RPAQQLLDEL CDLAAGSSSS  60
IRCSSYTKKY RDGFRVSSEG YAGPESSSGG GGIGGDSSGL NESNVRPEYL QKKAKLIFMQ  120
EEICKRYKQY HQQMQMVVSS FETVAGLSAA TPYISLALKT VSQHFKSLRN AIMDHLKSIR  180
QALGEDLPSP ASGMSNKGDG NSSRLNVDQT SLHKQKSGGG GGAGVGFFEA QQHVWRPQRG  240
LPERAVAILR AWLFDHFLHP YPTDTDKHML ASQTGLTRNQ VSNWFINARV RVWKPMVEEI  300
HMLETRGGPG GDQISTSIRK SDVNKLMTDR TNHVNCGHQH LSNVHSMNDL MSDKQGIGPS  360
ERFDGSNDHT WRNQEKRSRI ECHNIPPAAA ASIDGSLMGF VPYQRNALEI GGNIGPVSLT  420
LGLRQNAEAT QQQQQLQLHE HRLRQQFGGH MIHDFVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16241298158Homeobox protein Meis1
4xrs_B1e-16241298158Homeobox protein Meis1
5bng_A2e-16241299159Homeobox protein Meis2
5bng_B2e-16241299159Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3563201e-126AY356320.1 Solanum tuberosum putative ribosomal protein and L382 genes, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548816.10.0PREDICTED: BEL1-like homeodomain protein 8
TrEMBLA0A1U8EQY20.0A0A1U8EQY2_CAPAN; BEL1-like homeodomain protein 8
STRINGPGSC0003DMT4000208250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-84BEL1-like homeodomain 8