PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g18180
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 404aa    MW: 47198.6 Da    PI: 9.7528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g18180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.9e-141595899
                -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +k+g + +p  f+ ++ +g+  e+++  +  ++g++W +kl  + k+    ++kGW +F ++n+++ gD++vF+++g++ef   v +f++
  CA11g18180 15 QPGFKHG-IKIPVGFL-KYlKGE--EHIEHAILKRNGKRWLIKL--NDKR----FEKGWGKFTEENDVQLGDMLVFRYEGNMEF--EVCIFDS 95
                4555665.9*******.564666..67789999***********..7777....9*************************9999..8999886 PP
2B350.83.1e-161622421195
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 ++++ l+lp +f+ ++g+++++  +l+++de+ rsW++kl  + ++ r+++ +GW++F  +n Lk gD ++F+++  +++++v k
  CA11g18180 162 NSRCFLCLPQRFTYANGLINKK-CDLIIRDERQRSWKLKL--SSCKTRTYIIGGWQKFSADNCLKRGDRIMFEVVT-NGETPVWK 242
                 57899***********988654.59***************..88888999999********************876.44445544 PP
3B342.98.6e-14295377288
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 +++l +++++++ +l++p +fa+++g  + ++ +++l+de  r W+v +   + +  + +t+GW +F  ++gL++gD   F+l+++ 
  CA11g18180 295 ISTL-KPYSFSKPNLYFPMDFAKSNGWMN-RKCEMILKDEAERCWSVWI--GRMGHNFGITRGWTNFRVEKGLQVGDAYKFELIKNG 377
                 4555.778888888***********5443.4459***************..888888*************************99863 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-19397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-19498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.069796IPR003340B3 DNA binding domain
CDDcd100173.07E-12894No hitNo description
SMARTSM010196.4E-111096IPR003340B3 DNA binding domain
PfamPF023621.3E-111895IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041152246IPR003340B3 DNA binding domain
SMARTSM010197.6E-12157246IPR003340B3 DNA binding domain
CDDcd100171.81E-11161231No hitNo description
SuperFamilySSF1019367.06E-17161244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-16163244IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-13163242IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-19288385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-18288385IPR015300DNA-binding pseudobarrel domain
CDDcd100174.78E-13292386No hitNo description
PROSITE profilePS5086312.167293387IPR003340B3 DNA binding domain
SMARTSM010192.5E-14293391IPR003340B3 DNA binding domain
PfamPF023625.5E-13295378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MNIPPKKPHF FKPVQPGFKH GIKIPVGFLK YLKGEEHIEH AILKRNGKRW LIKLNDKRFE  60
KGWGKFTEEN DVQLGDMLVF RYEGNMEFEV CIFDSTHCDR EYAEYLQEER GGGFCLLEEI  120
SKKFKFKERP RPRIKLSKKA SSRVKAIVHH KSFGSHFDYT INSRCFLCLP QRFTYANGLI  180
NKKCDLIIRD ERQRSWKLKL SSCKTRTYII GGWQKFSADN CLKRGDRIMF EVVTNGETPV  240
WKFRVVTNQE TPLQNFQGKF SHFFDDLFSF SYIMSLLDAQ VATSTSGDDD HPYFISTLKP  300
YSFSKPNLYF PMDFAKSNGW MNRKCEMILK DEAERCWSVW IGRMGHNFGI TRGWTNFRVE  360
KGLQVGDAYK FELIKNGKVP IAYFHCKCSF SSYVLLSCLS SIL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546050.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A2G2YHZ70.0A0A2G2YHZ7_CAPAN; Uncharacterized protein
STRINGXP_009804336.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-44B3 family protein