PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g17990
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 306aa    MW: 34695.2 Da    PI: 8.2364
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g17990genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.7e-1414101146
                      TSSS-HHHHHHHHHHHHHTTTT...........................................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........................................tWktIartmgkgRtlkqcksrwqk 46 
                      rg+W+++Ed +l+d ++++G+                                            +W+ Ia+ ++ gRt++++k++w++
       CA11g17990  14 RGPWSPDEDAKLKDFIHKFGTAgnwialpqkadldgfltknlleivrfysrllrvnlviclfyicRWSIIAAQLP-GRTDNDIKNYWNT 101
                      89******************99*****************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-20535IPR009057Homeodomain-like
PROSITE profilePS5129410.1799107IPR017930Myb domain
SMARTSM007178.1E-1213105IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-1214104IPR009057Homeodomain-like
PfamPF002494.0E-1114101IPR001005SANT/Myb domain
CDDcd001676.25E-816103No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2079107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPD EDAKLKDFIH KFGTAGNWIA LPQKADLDGF LTKNLLEIVR  60
FYSRLLRVNL VICLFYICRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL IIPNNNNNNN  120
FINIQKKSPH FLSTTTTTSF HQAQQNLGPL ITGLEQPIIS SAQQNILPNM MIMTNNYNFP  180
NFGATNYNLQ NYPKFEANCL QNYSQFGEVA SCSSSDGSYC SQMSFGNKEI NNNIKREEIM  240
RFGQTIFEGI NNQQFNLDYY GNMEQLATNC CTNGNNGSTS ISSNNLLLYN DENCNKSNEI  300
GMFYY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4965860.0JF496586.1 Capsicum annuum BLIND (BLIND) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311565.11e-179transcription factor RAX2-like
TrEMBLA0A2G2YHJ30.0A0A2G2YHJ3_CAPAN; Transcription factor RAX2
STRINGSolyc11g069030.1.11e-113(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-42myb domain protein 36