PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g16490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 415aa MW: 46661.6 Da PI: 8.78 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.4 | 7.3e-50 | 46 | 172 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 + pGfrF Ptdeel+++yLkkkveg++ + evi+ev+i k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+sgyWkatgk+++v+s +++ CA11g16490 46 MFPGFRFCPTDEELISYYLKKKVEGSDKCV-EVISEVEIWKHEPWDLPaKSIVQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGKERNVKS-GSN 142 579************************777.99***************777888999**************************************.99* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+k+tLvf+ grapkg++t+W+mhey + CA11g16490 143 MIGTKRTLVFHIGRAPKGQRTQWIMHEYCM 172 ****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-56 | 42 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.859 | 46 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-26 | 48 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MEDGDLLGST SEKKDGEIVK VYNNSGSNND GGEKNVGITV ATASSMFPGF RFCPTDEELI 60 SYYLKKKVEG SDKCVEVISE VEIWKHEPWD LPAKSIVQSD NEWFFFSPRG RKYPNGSQSK 120 RATESGYWKA TGKERNVKSG SNMIGTKRTL VFHIGRAPKG QRTQWIMHEY CMTGNSYYQD 180 SMVVCRLRKN NELPLNDTPG NQRNHLAATN VTTALFEAGQ LDGLGLINGG ECCSKEGSSS 240 YSSRSVEQIE SGSESDKLNK ELPQHHSSSY WKDRDEEDCF ADIMKDDIIK LDDSSDRARH 300 NLLPTITRKI EPSTKPTTSQ EAQNLMPQSH RLPFQGTANR RLKLQTEKPP RRVKRSEPHE 360 AIKKNSHARD ISRQLINIIP VTRTIPLLLV SLMLLIVYLS LFGVPKQVKS HYSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-45 | 42 | 191 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-45 | 42 | 191 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-45 | 42 | 191 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-45 | 42 | 191 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-45 | 42 | 191 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-45 | 42 | 191 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-45 | 42 | 191 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-45 | 42 | 191 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 3e-99 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548085.1 | 0.0 | PREDICTED: NAC domain-containing protein 40-like | ||||
TrEMBL | A0A2G2YH79 | 0.0 | A0A2G2YH79_CAPAN; NAC domain-containing protein 89 | ||||
STRING | PGSC0003DMT400050482 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22290.1 | 9e-78 | NAC domain containing protein 89 |