PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g14620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29652 Da PI: 8.8954 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G+ +W+ +++ g+ R++k+c++rw +yl CA11g14620 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWMNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde+++++++qlG++ W++Ia +++ gR+++++k++w++ CA11g14620 67 RGNYTKEEDEIILNLHAQLGNK-WSAIAVHLP-GRSDNEIKNHWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.276 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.66E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.644 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.62E-11 | 69 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-26 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVRTPCHDEK GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWMNY 60 LRPNVKRGNY TKEEDEIILN LHAQLGNKWS AIAVHLPGRS DNEIKNHWHT ALKKRANYAS 120 TSSDVSSKKS NKKKNSGSNT RRTSTSVENK NASSSMSIVA SHENIVLESS DWSPKKSSSE 180 EFSSYNTTDY QEQHKIFQEA LEDITSGSFW TEPFVVESFN TTRIDFLAPS IDCELMCPPS 240 PFIGQEFLSS FDFDHYNW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579452.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SJX8 | 5e-55 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A2G2XZS6 | 0.0 | A0A2G2XZS6_CAPAN; Myb-related protein | ||||
STRING | Solyc07g053230.2.1 | 1e-126 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 9e-55 | myb domain protein 107 |
Publications ? help Back to Top | |||
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