PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g13750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | WOX | ||||||||
Protein Properties | Length: 128aa MW: 14728.6 Da PI: 10.233 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 3 | 64 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t+eq+ Lee+++k r+p+a++++ ++++l +++ ++V++WFqN++a++++ CA11g13750 3 RPTRWSPTPEQIMFLEEMYRKgVRNPNATQIQSITAHLssfgKIEGKNVFYWFQNHKARDRQ 64 569*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 116 | 1.8e-37 | 5 | 65 | 4 | 64 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 tRW+PtpeQi+ Lee+y++G+r+Pn+ +iq ita+L+++Gkie+kNVfyWFQN+kaR+rqk CA11g13750 5 TRWSPTPEQIMFLEEMYRKGVRNPNATQIQSITAHLSSFGKIEGKNVFYWFQNHKARDRQK 65 8***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.641 | 1 | 65 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-5 | 2 | 69 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-12 | 3 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.0E-18 | 3 | 64 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.97E-4 | 3 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-7 | 6 | 64 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MTRPTRWSPT PEQIMFLEEM YRKGVRNPNA TQIQSITAHL SSFGKIEGKN VFYWFQNHKA 60 RDRQKLKKKL LAQMNQQQIL SQYPIDAHSS TTTTNSNNTN TNATLFHCPT DQYQIFPVTS 120 TGIHQEV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-108 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016546189.1 | 5e-89 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
Swissprot | Q9SIB4 | 1e-35 | WOX3_ARATH; WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A2G2YGK9 | 5e-91 | A0A2G2YGK9_CAPAN; Uncharacterized protein | ||||
STRING | Solyc11g072790.1.1 | 6e-65 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 4e-37 | WOX family protein |
Publications ? help Back to Top | |||
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