PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g13580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 25952.9 Da PI: 7.5968 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++lv +vk++G ++W+ a+ g++Rt+k+c++rw +yl CA11g13580 9 RGPWTEEEDLQLVFYVKLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 56 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ ++++ ++G++ W++Iar+++ gRt++++k++w++++ CA11g13580 62 RGKMTPQEERVVLELHSKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 107 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.871 | 4 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-28 | 8 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.40E-9 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 26.937 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-15 | 62 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.86E-9 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 64 | 110 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAQEEIMRRG PWTEEEDLQL VFYVKLFGDR RWDFLAKVSG LKRTGKSCRL RWVNYLNPDL 60 KRGKMTPQEE RVVLELHSKW GNRWSRIARK IPGRTDNEIK NYWRTHMRKK AQEQRKKSSI 120 SPSSSFSNSS SSSSISHEEX NFYDTGGLEL LKAEGEMKSS DQEQGGESMK IYSMDEIWKD 180 IELLEENEET TNKPIMGSIS PLWDYSLDSL WKDFDWSSFR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-29 | 9 | 111 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-29 | 7 | 111 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-29 | 6 | 111 | 1 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-29 | 6 | 111 | 1 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013110 | 1e-161 | BT013110.1 Lycopersicon esculentum clone 114397F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548288.1 | 1e-133 | PREDICTED: transcription factor MYB48 | ||||
Swissprot | Q9LX82 | 2e-76 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2G2YGD3 | 1e-158 | A0A2G2YGD3_CAPAN; Transcription factor MYB48 | ||||
STRING | PGSC0003DMT400040149 | 1e-131 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 7e-75 | myb domain protein 48 |
Publications ? help Back to Top | |||
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