PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g12620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SBP | ||||||||
Protein Properties | Length: 464aa MW: 50317.1 Da PI: 9.1067 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 122.2 | 2.4e-38 | 174 | 251 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ ls+akey+r+h+vC+ hsk+p+v+v+g+ +rfCqqCsrfh++sefDe+krsCrrrL++hn+rrrk+q+ CA11g12620 174 CCQVEGCNLVLSSAKEYYRKHRVCDSHSKCPKVIVAGVARRFCQQCSRFHSVSEFDEKKRSCRRRLSDHNARRRKPQQ 251 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.4E-31 | 167 | 236 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.915 | 172 | 249 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.02E-36 | 173 | 254 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.7E-30 | 175 | 248 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MEWNVKWDWG NLVMFGSKAS ESPKELQLTD WGVEEEGELD GGSFNLSSGG SGGYGSDVKC 60 GSSVKSSISA STDSSPKEGF KAPNFAFEVF DVSNEDRSKK LEPSKVEVFR KSPPMETSVG 120 SVEPVIGLKL GKRICETIGG GSSAKVSSSF PNPTSSAAAT KKAKSSSQNA PIPCCQVEGC 180 NLVLSSAKEY YRKHRVCDSH SKCPKVIVAG VARRFCQQCS RFHSVSEFDE KKRSCRRRLS 240 DHNARRRKPQ QETIQFNSAR LSSLFYGNSQ PMNFILNHAQ LIHSRAAANS TWERTQDSKF 300 SITRGFTPKA ERTGSTNGKS LLEGIQFSGG VGAQSNASSL FLPSKGTTAE VSHQGAKEST 360 FNMVIGPEFP RALSLLSTNS WGSSEPETVS LRHANQTSMP EQMMQAIPQG VPHISSQYWQ 420 GGQHSSGPRD HTLAANSHSG GSLQEMGLFK APFDTYFYLN AFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-24 | 166 | 248 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 247 | KKRSCRRRLSDHNARRRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016538564.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A2G2YFA3 | 0.0 | A0A2G2YFA3_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400084734 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 4e-52 | squamosa promoter binding protein-like 2 |