PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g12260
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 369aa    MW: 43001.1 Da    PI: 6.6753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g12260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.61.8e-47651902128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 ppG+rF P+deel+ +yLkkkv ++ l+  + ikev++yk+ P++L  +    +e+ewyfF++r++ky++g+r+nra+ +gyWkatg dk++++ ++ +
  CA11g12260  65 PPGYRFCPHDEELIIHYLKKKVMNELLPH-DKIKEVNLYKHSPQELSeNYSMLGEREWYFFTPRNRKYPNGDRPNRAAGTGYWKATGADKPIKH-NNVK 161
                 9*************************999.88**************8444445899**************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg +k Lvfy+g+ pkg kt+W+mhe+r+
  CA11g12260 162 VGFRKALVFYEGKPPKGDKTNWIMHEFRV 190
                 ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5661216IPR003441NAC domain
PROSITE profilePS5100554.63364216IPR003441NAC domain
PfamPF023652.7E-2565190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MASFDEQSKA HIKASSWSTT QNPKMQELDK QKQVVDDEKD LVVKPNYNIN TNGKRVYVDD  60
NFVFPPGYRF CPHDEELIIH YLKKKVMNEL LPHDKIKEVN LYKHSPQELS ENYSMLGERE  120
WYFFTPRNRK YPNGDRPNRA AGTGYWKATG ADKPIKHNNV KVGFRKALVF YEGKPPKGDK  180
TNWIMHEFRV NESRRLKSHA SDMRLDDWVL CRIYKKVDKS FKASRKDEHV EVDATRSCSS  240
VGKVKNCDYE GIMDSCGELA RQHFELPHQY DITLDDPNFM PDYFSHYGAR SSNYGMYFQP  300
SFSPGNMYVW DHKGYQENNY LPVHFDFNNF CQDPCENIGE IESHIVLNND VNNGVLDVVD  360
ENSSIDKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-566421615168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-73HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755231e-73HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546854.10.0PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A2G2YFZ30.0A0A2G2YFZ3_CAPAN; NAC transcription factor
STRINGXP_009759087.11e-180(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-62NAC domain containing protein 32