PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g11000
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CO-like
Protein Properties Length: 429aa    MW: 47088.6 Da    PI: 7.5941
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g11000genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.7e-081457441
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                ++C++++++++++ C +++  lC++C    H +      H++ p
  CA11g11000 14 QICDNCGSEPVSIRCATDNLVLCRECDWDAHGScavsgtHDRNP 57
                79*************************99994488888887766 PP
2CCT64.33.7e-22380423144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  CA11g11000 380 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 423
                 7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.6981158IPR000315B-box-type zinc finger
PfamPF006432.0E-51457IPR000315B-box-type zinc finger
CDDcd000214.85E-71544No hitNo description
PfamPF062031.6E-16380422IPR010402CCT domain
PROSITE profilePS5101714.912380422IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
HSANALSKKH LRSQICDNCG SEPVSIRCAT DNLVLCRECD WDAHGSCAVS GTHDRNPVEG  60
FSGCPSASDL ASAWGLDIEA KKRPHKQPTC PSWMSKDAPP PSILLQDLMV PSVNNSGIYS  120
ITASAREVGR KQTPTCGKQK QVILKQLTEL FKRDLADGVG AGADDLVLKT PNDSSDWQGN  180
VNVMDGSDAV MVGVAQKLEQ QQPQNVPFNS LIIPHNPKDS DQVVERNILW SENSYDQNTQ  240
IWDFNLGQLR SHEQSRSLEA DYIESDMAYM MKSYDELIRG TSLASSKGLG FSGINCSAAH  300
DDMTAFSNNS NNRAASQGPA TSESNNLPRI KNSSDSGYVK PKCCGVSTDL NFMDQSIVVG  360
GENSCAETLK ADMELMAKNR GNAMQRYKEK KKTRRYDKHI RYESRKARAD TRKRVKGRFV  420
KANEAPDC*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-100HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555175.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1U8FHD30.0A0A1U8FHD3_CAPAN; zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A2G2YFC50.0A0A2G2YFC5_CAPAN; Zinc finger protein CONSTANS-LIKE 15
STRINGPGSC0003DMT4000653770.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.13e-79B-box type zinc finger protein with CCT domain