PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g10930

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CAMTA

Protein Properties

Length: 1024aa MW: 115201 Da PI: 6.6173

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g10930	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	152.8	7.5e-48	8	114	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e + rwlk+ e++ iL n+e+h+ +sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqrr+yw CA11g10930 8 REaQIRWLKPAEVLFILRNHENHQ--------LSSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEQNPNFQRRSYW 98 55589**************988........789************************************************************ PP CG-1 101 lLeeelekivlvhyle 116 +L+ ++++ivlvhy++ CA11g10930 99 MLDPAYDHIVLVHYRD 114 ************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.181	3	121	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-66	6	116	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.6E-40	9	114	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	6.1E-9	481	568	IPR013783	Immunoglobulin-like fold
CDD	cd00102	6.11E-5	484	568	No hit	No description
Pfam	PF01833	6.3E-9	484	567	IPR002909	IPT domain
SuperFamily	SSF81296	4.34E-19	484	568	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.8E-14	681	777	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.743	683	775	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.71E-15	685	777	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.26E-12	688	775	No hit	No description
Pfam	PF12796	3.2E-6	699	776	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0038	716	745	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.06	716	748	IPR002110	Ankyrin repeat
SMART	SM00015	19	833	855	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.668	834	863	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.17E-6	884	940	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	6.4	892	914	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.529	893	922	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.015	895	913	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0056	915	937	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.791	917	941	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.5E-5	918	937	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1024 aa Download sequence Send to blast
YDINDLVREA QIRWLKPAEV LFILRNHENH QLSSGSLFLF NKRVLRFFRK DGHSWRKKKD 60 GRTVGEAHER LKVGNAEALN CYYAHGEQNP NFQRRSYWML DPAYDHIVLV HYRDITEGRQ 120 NPVFMSESSP ISSAFSPSPR SYSTQHTGST VIASESYELY QNQSSPGEIC SDAVINNSGT 180 SDTTGRTEEP ISSPGLEMSQ ALRRLEEQLS LNDDSFKEID PLYADAINDD SSFIQMQGNS 240 NGLLLQHHLG LSFSYINIFV ECILTCLFLA RYVYDNAIHF NFVQRTANTF ITSRISLPPY 300 SPPHHCWDNF PFAFVCTAIT LIVPAFQSLT RTSRHSVTGC FFIKFKHATI YSESSESHHQ 360 DLTQDSDMWK DMLDDYGVSA AAESQTKYLH KLDENAMLQI SSERCAIETY GSYKWPCFSD 420 KEAPTAQVPD FKQLEDFKYP TYPPDINTFG SNPDKYTTLF DQDHIGTSLE DEVSLTIAQK 480 QKFTIRDISP DWGYSSEATK VVIIGSFLCN PSECTWACMF GDIEVPVQII QEGVICCQAP 540 RHLPGKVTLC VTSGNRESCS EVREFEYRVE PDDCARNNQP DVVGAYQSSE ELLLLVRFVQ 600 LLLSDLSVQK GDSSELANDF LEKSKANEDS WSQVIESLLF GTSTSMITID WLLQELLKDK 660 FQQWLYCKLQ QKDNQIGCSL SKKEQGIIHM VAGLGYEWAL HPILNAGLSV NFRDINGWTA 720 LHWAARFGRE KMVASLIASG ASAGAVTDPS SRDPVGKTAA SIASSCGHKG LAGYLSEVAL 780 TSHLSSLTLE QSELSKGTAD VEAERTISSI SNTSATINED QRSLKDTLAA VRNAAQAAAR 840 IQSAFRAHSF RKRQLRESVV SATTSGDEYG VLSNDIHGLS AASKLAFRNT RDYNSAALAI 900 QKKYRGWKGR KDFLAFRQKV VKIQAHVRGY QVRKQYKVCW AVGILEKVVL RWRRRGVGLR 960 GFRHDIESID ESEDEDILKV FRKQKVDAAL DEAVSRVLSM VESPGARQQY HRILEKYRQA 1020 KVS*

Sequence ? help Back to Top

Protein Sequence Length: 1024 aa Download sequence Send to blast

YDINDLVREA QIRWLKPAEV LFILRNHENH QLSSGSLFLF NKRVLRFFRK DGHSWRKKKD  60
GRTVGEAHER LKVGNAEALN CYYAHGEQNP NFQRRSYWML DPAYDHIVLV HYRDITEGRQ  120
NPVFMSESSP ISSAFSPSPR SYSTQHTGST VIASESYELY QNQSSPGEIC SDAVINNSGT  180
SDTTGRTEEP ISSPGLEMSQ ALRRLEEQLS LNDDSFKEID PLYADAINDD SSFIQMQGNS  240
NGLLLQHHLG LSFSYINIFV ECILTCLFLA RYVYDNAIHF NFVQRTANTF ITSRISLPPY  300
SPPHHCWDNF PFAFVCTAIT LIVPAFQSLT RTSRHSVTGC FFIKFKHATI YSESSESHHQ  360
DLTQDSDMWK DMLDDYGVSA AAESQTKYLH KLDENAMLQI SSERCAIETY GSYKWPCFSD  420
KEAPTAQVPD FKQLEDFKYP TYPPDINTFG SNPDKYTTLF DQDHIGTSLE DEVSLTIAQK  480
QKFTIRDISP DWGYSSEATK VVIIGSFLCN PSECTWACMF GDIEVPVQII QEGVICCQAP  540
RHLPGKVTLC VTSGNRESCS EVREFEYRVE PDDCARNNQP DVVGAYQSSE ELLLLVRFVQ  600
LLLSDLSVQK GDSSELANDF LEKSKANEDS WSQVIESLLF GTSTSMITID WLLQELLKDK  660
FQQWLYCKLQ QKDNQIGCSL SKKEQGIIHM VAGLGYEWAL HPILNAGLSV NFRDINGWTA  720
LHWAARFGRE KMVASLIASG ASAGAVTDPS SRDPVGKTAA SIASSCGHKG LAGYLSEVAL  780
TSHLSSLTLE QSELSKGTAD VEAERTISSI SNTSATINED QRSLKDTLAA VRNAAQAAAR  840
IQSAFRAHSF RKRQLRESVV SATTSGDEYG VLSNDIHGLS AASKLAFRNT RDYNSAALAI  900
QKKYRGWKGR KDFLAFRQKV VKIQAHVRGY QVRKQYKVCW AVGILEKVVL RWRRRGVGLR  960
GFRHDIESID ESEDEDILKV FRKQKVDAAL DEAVSRVLSM VESPGARQQY HRILEKYRQA  1020
KVS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566048	0.0	JN566048.1 Solanum lycopersicum calmodulin-binding transcription factor SR2L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553914.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2G2VNL6	0.0	A0A2G2VNL6_CAPBA; Calmodulin-binding transcription activator 4
STRING	PGSC0003DMT400084738	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-178	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]