PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g10230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 404aa MW: 44470.6 Da PI: 8.3407 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g CA11g10230 49 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 98 69*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.5E-34 | 49 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-29 | 49 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.04E-30 | 49 | 105 | No hit | No description |
Pfam | PF00847 | 1.0E-10 | 49 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.089 | 49 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-21 | 49 | 106 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-9 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MEDAMRRLNQ ESDLPVQNSK NSSTLTKRSS CATNKRPVKD STSGSSAVRY RGVRRRPWGR 60 YAAEIRDPQS KERRWLGTFD TAEEAACAYD CAARAMRGVK ARTNFVYPPC PSPTQPTSTN 120 DFLNIPSFNY IKSSSSSHQY LGSTLKDLSN RPFFHSSSPY GSTVRGFNST IGSMCQKSNE 180 SLNMLLFREL LSSNSYSTNN ACSTIGNLNV TSTSMPNLYE QALPNFMFNR NVTSGPSLMP 240 TSDTVIPSSS VMTTHVPKFE NIIHSTVNTT TAAIDDSVGM EFFPSEPSDS GLLEEALNGF 300 FPKPKPIKSQ LILPNYSSTN VSTKGERLSN IFPHQQQHQI NEGLNSDFGF LSQTTSSPAS 360 SFPVYNQDYL PANLQVSPGD NMMGDIFQYP DLLSIFSAKL QNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 44 | 105 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552721.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR1-like | ||||
Refseq | XP_016557500.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR1-like | ||||
TrEMBL | A0A1U8F255 | 0.0 | A0A1U8F255_CAPAN; Ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A1U8FFL6 | 0.0 | A0A1U8FFL6_CAPAN; ethylene-responsive transcription factor ESR1-like | ||||
STRING | PGSC0003DMT400047887 | 1e-161 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 3e-13 | DORNROSCHEN-like |