PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g08370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TALE | ||||||||
Protein Properties | Length: 112aa MW: 13255.1 Da PI: 10.2129 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31 | 4.3e-10 | 54 | 87 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ LA+++gL+ +q+ +WF N+R ++ CA11g08370 54 WPYPTEADKNSLAESTGLDPKQINNWFINQRKRH 87 59*****************************985 PP | |||||||
2 | ELK | 33.3 | 1e-11 | 7 | 28 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrK++++L+sLk EFs CA11g08370 7 ELKDRLLRKFGSHLSSLKLEFS 28 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 10.196 | 7 | 27 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.8E-8 | 7 | 28 | IPR005539 | ELK domain |
SMART | SM01188 | 8.4E-6 | 7 | 28 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.908 | 27 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.98E-21 | 28 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.2E-14 | 29 | 94 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 32 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.22E-11 | 39 | 91 | No hit | No description |
Pfam | PF05920 | 2.6E-18 | 47 | 86 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MRCEDNELKD RLLRKFGSHL SSLKLEFSKK KKKGKLPKEA RQMLLAWWND HYRWPYPTEA 60 DKNSLAESTG LDPKQINNWF INQRKRHWKP SENMQLAVMD NLSGQFFSSD D* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | STU65648 | 1e-131 | U65648.1 Solanum tuberosum homeodomain protein POTH1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548951.1 | 1e-76 | PREDICTED: homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 1e-52 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A1U8ERC1 | 3e-75 | A0A1U8ERC1_CAPAN; homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A2G2YEI2 | 3e-75 | A0A2G2YEI2_CAPAN; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A2G3BSE3 | 3e-75 | A0A2G3BSE3_CAPCH; Homeobox protein knotted-1-like 1 | ||||
STRING | PGSC0003DMT400035095 | 7e-64 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA753 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.2 | 4e-44 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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