PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g08140

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

YABBY

Protein Properties

Length: 192aa MW: 21491.7 Da PI: 8.6383

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g08140	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	193.6	9.1e-60	4	172	5	165
YABBY 5 ssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakas....qllaaeshldeslkee.....lleelkveeenlksnvekeesas 93 + + +CyvqC++C+til+vsvP +s k+vtvrCGhCtslls+nl+kas +l + ++ +++++ l + + ++ee+++ n+++ + s CA11g08140 4 DLQDTLCYVQCGYCTTILLVSVPCSSFCnKIVTVRCGHCTSLLSLNLTKASllpfRLFDSFNQ-THQVRQIartyfLPKPEVDKEETVDANKKSVDLGS 101 57899******************98637**************999544433333333.22222222333333333333334444444444444 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 ++s+ +e++ e+v v +v++PPekrqr+Psayn+fikeei+r+ka P+++h++afs+aaknWahfP CA11g08140 102 PVIASSD-EEDKYENVLPVNQVNKPPEKRQRAPSAYNCFIKEEIKRLKALYPNMTHKQAFSTAAKNWAHFPS 172 4444433.6677778888999************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-56	6	173	IPR006780	YABBY protein
SuperFamily	SSF47095	2.62E-8	121	174	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.2E-5	123	174	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MFHDLQDTLC YVQCGYCTTI LLVSVPCSSF CNKIVTVRCG HCTSLLSLNL TKASLLPFRL 60 FDSFNQTHQV RQIARTYFLP KPEVDKEETV DANKKSVDLG SPVIASSDEE DKYENVLPVN 120 QVNKPPEKRQ RAPSAYNCFI KEEIKRLKAL YPNMTHKQAF STAAKNWAHF PSSQHRGSCS 180 LGDGKMAKVL S*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546914.1	1e-131	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	7e-53	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1U8ESN5	1e-129	A0A1U8ESN5_CAPAN; axial regulator YABBY 4
TrEMBL	A0A2U9G630	1e-129	A0A2U9G630_CAPCH; INNER NO OUTER
TrEMBL	A0A2U9G6K5	1e-129	A0A2U9G6K5_CAPAN; INNER NO OUTER
TrEMBL	A0A2U9G8V5	1e-129	A0A2U9G8V5_9SOLA; INNER NO OUTER
STRING	XP_009621066.1	6e-94	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-46	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]