PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g05840

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

BBR-BPC

Protein Properties

Length: 121aa MW: 13429.1 Da PI: 7.6097

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g05840	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	27.8	7e-09	24	119	142	220
GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader..................skaekksidlvlngvslDestlPvPvCsCtGalr 220 ++++e+k +kk +r+k+ +++k+ k + +++ ++ +++ ++ + +++k +l ln++++Des + v vCs tG+++ CA11g05840 24 TDTSEAKVPKKVRRPKESRHNKQAKIPRVGKNGAESLSMQVIATTsddwanllemdsdkeadtQLTSWK-DNLRLNQINFDESIMLVLVCSYTGTPQ 119 334455555555555555555555555555555555555554433566777777777777774455555.59***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	7.3E-8	27	119	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MHRTIVEAAH GSTKDPTTGY LKDTDTSEAK VPKKVRRPKE SRHNKQAKIP RVGKNGAESL 60 SMQVIATTSD DWANLLEMDS DKEADTQLTS WKDNLRLNQI NFDESIMLVL VCSYTGTPQP 120 *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560524.1	1e-71	PREDICTED: barley B recombinant-like protein D
TrEMBL	A0A2G2YE13	1e-84	A0A2G2YE13_CAPAN; Uncharacterized protein
STRING	XP_009789611.1	1e-64	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30