PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g05370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | WRKY | ||||||||
Protein Properties | Length: 250aa MW: 27475.2 Da PI: 8.2629 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 7.3e-30 | 31 | 90 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ ed +++++tYeg+Hnh+ CA11g05370 31 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCCEDMSILITTYEGTHNHS 90 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.9E-31 | 19 | 92 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-27 | 25 | 92 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.714 | 26 | 92 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-34 | 31 | 91 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-26 | 32 | 89 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MARISRNHDE DEDEDEXARV SIRAVCGTTT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVS 60 PTCPVRKQVQ RCCEDMSILI TTYEGTHNHS LPFSATAMAS TTSAAASMLR CTSSSTSPLP 120 QQSGLPNVNQ NLHGKFNFTN SNSNNLLPTY NNNASTFYLP PKTSISTCQS HPTITLDFTT 180 NSSLSSTHHT LISSQRYPSN SLKFSTPISP STSSTYLGRP CFSHQPLMIT SKNNQNTIEY 240 SGEVRNSDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 23 | 92 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357268.1 | 5e-87 | PREDICTED: probable WRKY transcription factor 72 | ||||
Swissprot | A0A3Q7GFB5 | 2e-53 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A2G2VLZ0 | 1e-151 | A0A2G2VLZ0_CAPBA; Uncharacterized protein | ||||
STRING | Solyc05g007110.2.1 | 3e-80 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1945 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 3e-45 | WRKY DNA-binding protein 9 |
Publications ? help Back to Top | |||
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