PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g04720
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20737.7 Da    PI: 10.1515
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g04720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.11.1e-181556344
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +n+ n   tfskRr g++KKA+ELS+LC++e+a ++fs++ 
  CA11g04720 15 MKNQNNLPATFSKRRDGLFKKASELSTLCGVEIATVVFSPSK 56
                68999999*******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.367555IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-24565IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-22679IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-13727IPR002100Transcription factor, MADS-box
PfamPF003194.1E-201556IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-132742IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-134263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRKPTGRKKI KIEKMKNQNN LPATFSKRRD GLFKKASELS TLCGVEIATV VFSPSKTSVY  60
SIGHPCVLSV VDKFLNPPPE TNSPQPLTKP YQNKDVTKMD KLIEAEEKRA LRLQSTNTKG  120
SYEGLNYFQL QELSDTLEAK LKMTERVEIQ QKESGIPFSF KSYGYALAPR ENISSTSDVG  180
PSRSS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546442.11e-123PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G3CBI01e-129A0A2G3CBI0_CAPCH; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-28AGAMOUS-like 62