PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g04690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SBP | ||||||||
Protein Properties | Length: 145aa MW: 16176.6 Da PI: 9.964 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 41.5 | 3.6e-13 | 85 | 116 | 46 | 77 |
TSSEEETTT--SS--S-STTTT-------S-- CS SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkq 77 rfh l efD++k+sCr++L +hner+rk++ CA11g04690 85 LLRFHLLAEFDDGKQSCRKHLPGHNERQRKPH 116 469**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 11.631 | 21 | 115 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.2E-10 | 86 | 119 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 7.2E-4 | 86 | 102 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.0E-7 | 87 | 114 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MRGVGNIFGS VVGAFSGEDK SGSISTDSSL IDLKPGRFPD HVTANIFKYP KSMPSFTTSE 60 YIFQAKRMHQ VLLVSTKAEF SLDTLLRFHL LAEFDDGKQS CRKHLPGHNE RQRKPHIGMH 120 SGYKLFLSFA IKVVLNFAYC SFTL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545418.1 | 5e-44 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_016545419.1 | 5e-44 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2G2YDK2 | 1e-102 | A0A2G2YDK2_CAPAN; Uncharacterized protein | ||||
STRING | Solyc03g114850.2.1 | 2e-27 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-11 | SBP family protein |