PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g04580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 410aa MW: 46108.9 Da PI: 7.6197 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.9 | 8e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ CA11g04580 16 MLPGFRFHPTDEELVGFYLRRKVQQKPISI-ELIKQLDIYKYDPWDLPKLAAVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGSK 113 579***************************.89***************8778899***************************************95667 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg+ktdW+mhe+rl CA11g04580 114 CIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143 7***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-58 | 12 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.406 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MEERKEKEKS TMDEVMLPGF RFHPTDEELV GFYLRRKVQQ KPISIELIKQ LDIYKYDPWD 60 LPKLAAVGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSE GSKCIGLKKS 120 LVFYKGRAAK GVKTDWMMHE FRLPSITDST APKRFLDKHI PPNDSWAICR IFKKANSNAH 180 RALSHSWVSP PPLPQAQSNT TLSHDFLASS HFSNSDEMSL FIHKTNTTSP IQFNDLQNSS 240 NNLASFSTLD LPLYKTLNSI SSYNNKPPQQ ISISNHHDPI TTSYTFSSSC VENMNNIDAS 300 SLLLNMSSSI FGDYSITLPE SMEGGGGGGV HEETITALKE ANNVINNMEH MEEQWGNVVR 360 SNIGVLPLVN NFPLNVAADA WKTSLLWDSS SPCPSSEMST SYSTNKCYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-54 | 18 | 177 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 18 | 177 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 18 | 177 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 18 | 177 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-54 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-54 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-54 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-54 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-54 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-54 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-54 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-54 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-54 | 18 | 177 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 18 | 177 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149288 | 1e-140 | AC149288.1 Solanum demissum chromosome 5 clone PGEC446J10, complete sequence. | |||
GenBank | EF514212 | 1e-140 | EF514212.1 Solanum tuberosum strain P6/210 contig R1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574673.1 | 0.0 | PREDICTED: putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 1e-107 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1U8H0U8 | 0.0 | A0A1U8H0U8_CAPAN; Protein FEZ | ||||
TrEMBL | A0A2G2YDI3 | 0.0 | A0A2G2YDI3_CAPAN; putative NAC domain-containing protein 94 | ||||
STRING | PGSC0003DMT400080307 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-110 | NAC family protein |
Publications ? help Back to Top | |||
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