PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g04530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 273aa MW: 30023.4 Da PI: 8.3613 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 76.1 | 5.1e-24 | 63 | 113 | 3 | 52 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnF 52 +v+YkeClkNhAas+GghavDGCgEf++s++++ +++ +l CaACg +F CA11g04530 63 AVTYKECLKNHAASIGGHAVDGCGEFIASPESTqSNPISLSCAACGYFISF 113 799**************************999889***********88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.2E-20 | 64 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-16 | 64 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.6E-21 | 65 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.217 | 66 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-28 | 151 | 219 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-17 | 153 | 219 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.2E-25 | 158 | 215 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MDLTCTNNPT PTPSHTPTKT PDSEIDTPPL IKPLSFTNFT FKNHHHNHNH NRQPPCAPPS 60 STAVTYKECL KNHAASIGGH AVDGCGEFIA SPESTQSNPI SLSCAACGYF ISFRHHILPP 120 IHHFSPSSSP SSSPSPPPPP PLPQPQPQPI KAEKPCGRKR FRTKFTQEQK EKMHLFSEKL 180 GWKLQKVDEV AVDEFCREVG VGKGVLRVWM HNNKNTFGKK VHSFENKNGF NMNGGTSSNE 240 DNHRHNDNNN DNSTSNCELH LHISTNGSSS SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 159 | 216 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574674.1 | 1e-140 | PREDICTED: zinc-finger homeodomain protein 10-like | ||||
TrEMBL | A0A2G2VLP7 | 1e-139 | A0A2G2VLP7_CAPBA; Zinc-finger homeodomain protein 11 | ||||
STRING | PGSC0003DMT400080288 | 1e-101 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 7e-42 | homeobox protein 30 |