PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g04380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 343aa    MW: 39131.3 Da    PI: 8.8695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g04380genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++l+  ++++G g+W++ +++ g+ R++k+c++rw +yl
       CA11g04380 14 KGPWTHDEDQKLLSFIEKHGCGSWRSLPAKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding475.9e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E+  +++++++lG++ W++Ia +++ +Rt++++k++w++
       CA11g04380  67 RGKFSLQEERTIIHLHALLGNR-WSAIATYLP-RRTDNEIKNYWNS 110
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.978961IPR017930Myb domain
SuperFamilySSF466893.55E-2911108IPR009057Homeodomain-like
SMARTSM007174.3E-111363IPR001005SANT/Myb domain
PfamPF002492.8E-151461IPR001005SANT/Myb domain
CDDcd001678.14E-101661No hitNo description
PROSITE profilePS5129424.45962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2465116IPR009057Homeodomain-like
SMARTSM007172.1E-1466114IPR001005SANT/Myb domain
PfamPF002493.0E-1467110IPR001005SANT/Myb domain
CDDcd001671.15E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRSKCCDKE GLKKGPWTHD EDQKLLSFIE KHGCGSWRSL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATYLPRRT DNEIKNYWNS RLKKRLTKMG  120
IDPMTHKPKI TNKLNGVASS KYVANLSHMA EWESARLEAE ARLVQKSKDS KILFNNNNIN  180
HSTISQQLPY YQPPCLDILK AWQMSSTKLP TINDISAILL NNSRNNNLES SIPSTLNSSE  240
NLFVNNNVPT TTANVRDDHQ IPPNLSTFES CFEDDQLQTD LPSFMQEFSG LFPEYYTQNS  300
TNIQVDNFMG SCSGDIEDNK LINWNNFPHY LVNSPIGSPL FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1501621e-147AC150162.1 Solanum demissum chromosome 5 clone PGEC160O2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546472.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9LE631e-94MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2G2XYE40.0A0A2G2XYE4_CAPAN; Transcription factor MYB39
STRINGPGSC0003DMT4000474460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.14e-94myb domain protein 16