PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g04260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | G2-like | ||||||||
Protein Properties | Length: 363aa MW: 40759.8 Da PI: 6.9264 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.3e-33 | 21 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl CA11g04260 21 KPRLKWTPDLHQRFVDAVSQLGGPDKATPKSLMRVMNIHGLTLYHLKSHLQKYRL 75 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.224 | 18 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-31 | 19 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.55E-16 | 20 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-23 | 21 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-8 | 23 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.3E-21 | 157 | 203 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MALQNTQQSK DMNLVLSSDA KPRLKWTPDL HQRFVDAVSQ LGGPDKATPK SLMRVMNIHG 60 LTLYHLKSHL QKYRLGKSQV TDQSFDEKKQ EGKLELCTIA HDDDTKENEI SKSLNQRTYF 120 DAESDQLSLG VSCDGSQNQM NDIYNISLAK AFVRSLQIAR ALQMQMDVQR KLHQQIEVQR 180 HLQLRIEAQG KYLQSVLRKA QETLAGYGTS SVGVELAKAE LSQLVSMVNM SCCPSTSLSA 240 ITEIDGSISK DTQTKNLKGG ILSSLESSLT SSESSARKED QNDTRNNKNT NCIGLSLNQE 300 TKERKRSRNN ICDHDMCVEQ PSGKRFLETI DLNSKCPNEY DENGPKVIDL NYKEVEQFNE 360 YS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-20 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-20 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-20 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-20 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-20 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-20 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-20 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-20 | 20 | 77 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571687.1 | 0.0 | PREDICTED: uncharacterized protein LOC107869749 isoform X1 | ||||
TrEMBL | A0A2G2YDE5 | 0.0 | A0A2G2YDE5_CAPAN; Uncharacterized protein | ||||
STRING | Solyc05g007890.2.1 | 1e-176 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6036 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.2 | 8e-78 | G2-like family protein |