PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g04250

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 397aa MW: 43946.8 Da PI: 7.2696

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g04250	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss CA11g04250 66 PDKIIPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKNSS 126 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	66	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-32	68	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
IALGGELTQS KQDDVLVDPT ADSSVEPETS SGISDDLKMQ DAEKEILSSK SIEEEDSSEE 60 KTLKKPDKII PCPRCNSMET KFCYYNNYNV NQPRYFCKNC QRYWTAGGTM RNVPVGSGRR 120 KNKNSSTSIY PLQAGRVEAA HGMHLPALRT NGTILTFGSD KPLCDSMASA LNIAENSHNM 180 NRNEYCGSER RMPAIANDQS NGTCSTASSI TDKESNSGPH DLANWSNFQP FSPQVPYFHG 240 APWPYSGFPV SFYPATPYWG CTVASPWNVP WLSSDQSVHN TSPASPTLGK HSRDESKFDP 300 SQSRRRDATL QDREGERCVL IPKTLRIHDP NEAAKSSIWS TLGIKNEKIH STHGTMLFSS 360 FNPKADLRNH ERDASLLLQA NPAALSRSLK FRESTQ*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

IALGGELTQS KQDDVLVDPT ADSSVEPETS SGISDDLKMQ DAEKEILSSK SIEEEDSSEE  60
KTLKKPDKII PCPRCNSMET KFCYYNNYNV NQPRYFCKNC QRYWTAGGTM RNVPVGSGRR  120
KNKNSSTSIY PLQAGRVEAA HGMHLPALRT NGTILTFGSD KPLCDSMASA LNIAENSHNM  180
NRNEYCGSER RMPAIANDQS NGTCSTASSI TDKESNSGPH DLANWSNFQP FSPQVPYFHG  240
APWPYSGFPV SFYPATPYWG CTVASPWNVP WLSSDQSVHN TSPASPTLGK HSRDESKFDP  300
SQSRRRDATL QDREGERCVL IPKTLRIHDP NEAAKSSIWS TLGIKNEKIH STHGTMLFSS  360
FNPKADLRNH ERDASLLLQA NPAALSRSLK FRESTQ*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC284850	0.0	KC284850.1 Solanum tuberosum clone CE3130 chromosome 5 cycling DOF factor-like protein (CDF1.2) mRNA, CDF1.2-f allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016570160.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1U8GGB9	0.0	A0A1U8GGB9_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2YDE9	0.0	A0A2G2YDE9_CAPAN; cyclic dof factor 1-like
TrEMBL	A0A2G3B7Q8	0.0	A0A2G3B7Q8_CAPCH; Uncharacterized protein
STRING	PGSC0003DMT400047370	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-82	cycling DOF factor 2