PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g03320
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family YABBY
Protein Properties Length: 156aa    MW: 17389.9 Da    PI: 8.491
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g03320genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1364.4e-4241443160
       YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                 v+ss +++Cyv+CnfC+t+lav +P++ l+ +vtv+CGhC++l  ++ +   q++   ++           +l+   +++k + ++++sas s+sse l
  CA11g03320   4 VQSSEQHLCYVRCNFCSTVLAVGIPYKRLMDTVTVKCGHCSNLSFLSTRPPIQAQCFDHQ----------PTLQGYCDEFKNKGQASSSAS-STSSEPL 91 
                 5678889***********************************876555555444433332..........223333333333333333322.3333343 PP

       YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                       + p+++ v++PPek+ r Psaynrf+keeiqrik++nP+i hreafsaaakn 
  CA11g03320  92 ------SPPHAHFVVKPPEKKHRLPSAYNRFMKEEIQRIKTENPEIPHREAFSAAAKNV 144
                 ......456667789*******************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.0E-498144IPR006780YABBY protein
SuperFamilySSF470952.36E-792141IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.4E-4101142IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDYVQSSEQH LCYVRCNFCS TVLAVGIPYK RLMDTVTVKC GHCSNLSFLS TRPPIQAQCF  60
DHQPTLQGYC DEFKNKGQAS SSASSTSSEP LSPPHAHFVV KPPEKKHRLP SAYNRFMKEE  120
IQRIKTENPE IPHREAFSAA AKNVSLIISL IFISS*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677491e-151KJ667749.1 Solanum sisymbriifolium CRC protein mRNA, complete cds.
GenBankKJ6677501e-151KJ667750.1 Solanum aethiopicum CRC protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546797.11e-105PREDICTED: protein CRABS CLAW
SwissprotQ76EJ09e-55YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A1U8EHV31e-103A0A1U8EHV3_CAPAN; protein CRABS CLAW
STRINGSolyc05g012050.2.17e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-52YABBY family protein