PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g01610
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 347aa    MW: 39209.6 Da    PI: 8.4646
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g01610genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.6e-39141248287
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssaseceaess 78 
                 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikelt++                      s +++++c+++++
  CA11g01610 141 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKNAIKELTRSiplennedhrkmrkiesrdrtrSEKPNKKCNQDQE 239
                 79**************************************************************87775555555555554444444444444433333 PP

         TCP  79 sssasnsss 87 
                   +++ +s+
  CA11g01610 240 LDETNPKSI 248
                 333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-39141257IPR005333Transcription factor, TCP
PROSITE profilePS5136937.361143201IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MFPTSNIIHD PFSYTSQELL KQSYNTHDHQ NPNSTSKLVV EEEDPFFLNF PSPFDFDDHE  60
LPLSQIFSQT SDNNHGTNQA GPDSAIKDNH SVDISRSTLL SAKIMGDQSS NPDISRKNPT  120
EPAMATSSKK RKLSAKPRRR TGKKDRHSKI CTAQGVRDRR MRLSLQIARK FFDLQDMLGF  180
DKASKTIEWL FSKSKNAIKE LTRSIPLENN EDHRKMRKIE SRDRTRSEKP NKKCNQDQEL  240
DETNPKSIDK LGSNSSKSYL ENQFANVGIM EKYLGGASCS SITSIFDYDN NGVIKGGIDN  300
ISDNYCFNNM GFLENCTITN EVQIPFAAGN NNPSSINLNN SRFQQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129139KRKLSAKPRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-104HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
GenBankHM9210671e-104HM921067.1 Solanum lycopersicum BRANCHED2b gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546900.10.0PREDICTED: transcription factor TCP18-like
TrEMBLA0A2G2YCP30.0A0A2G2YCP3_CAPAN; Transcription factor CYCLOIDEA
STRINGSolyc05g009900.1.11e-159(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-32TCP domain protein 12