PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g01550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 36955.9 Da PI: 8.2297 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107 | 2.3e-33 | 90 | 229 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWk 84 lp+G++F+Ptd+e+++ +L kveg + +++ +i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W+ CA11g01550 90 LPRGVKFDPTDQEIIW-HLLGKVEGGNrnshpfIDE--FIPTVNeddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIHgdnygDVRWH 184 799************5.5667777766577544222..3444422345**********.677888899******************85555555778** PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tg++k+v+ +g + g+kk++v+y ++ k+ekt+Wvmh+y+l CA11g01550 185 KTGRTKPVII-DGIQRGCKKIMVLYisPAKGGKAEKTNWVMHQYHL 229 **********.99************5534667778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-39 | 76 | 248 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.029 | 90 | 248 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-14 | 91 | 229 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MLFLVSVASF WELLWTVFLL SQGSIGNNLS TSEVGVRPSW LVDSKRIATK IKSASGDPGT 60 VNWKSNPTKA CPKCQFVIDN NDVSHDWPGL PRGVKFDPTD QEIIWHLLGK VEGGNRNSHP 120 FIDEFIPTVN EDDGICYTHP QNLPGVKQDG SVSHFFHRAI KAYNTGTRKR RKIHGDNYGD 180 VRWHKTGRTK PVIIDGIQRG CKKIMVLYIS PAKGGKAEKT NWVMHQYHLG TGEDEREGEY 240 VVSKVFYQQQ QQVKQGEKNE QEFPEDSECL VAKVDPHTPK SVTPEPPRVE RLSSSVDARQ 300 EIAASIISPI GQVLQNVIFL LLLVNVNFT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548189.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-130 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2G3B6N5 | 0.0 | A0A2G3B6N5_CAPCH; NAC domain-containing protein 8 (Fragment) | ||||
STRING | PGSC0003DMT400002122 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-116 | NAC family protein |