PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA11g01130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 348aa MW: 37877.1 Da PI: 5.4138 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.6 | 8.2e-10 | 4 | 42 | 8 | 50 |
AP2 8 wdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50 +k +gr++ eIrd + + kr++lg+f taeeA + + + CA11g01130 4 KRK-SGRFATEIRDpF-----SkKRIWLGTFNTAEEASEVYQSKK 42 455.8*********66.....44**************99886655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.183 | 1 | 56 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-13 | 2 | 38 | No hit | No description |
SuperFamily | SSF54171 | 2.48E-9 | 3 | 46 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-13 | 3 | 47 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-5 | 3 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MGRKRKSGRF ATEIRDPFSK KRIWLGTFNT AEEASEVYQS KKLEFQEKLN KAKNANKKKA 60 IPAKCELGLS SSDPPLMADA QTSDSSNELG DQFNKAKNAK DRKAISAKLG LGSSSDPPLM 120 IDSQTSDTLK EFVEQLKKAK SAKCKKAISA KFGLGCSSSD PPLMVHSLNS DTSNLFDDRS 180 KNTVNAKEEK AISAKFGLEF CSSDSQTSDS SNELDDRSKK AENAIVKKAI SAKFGLEFCS 240 SDTQTSDSSN ELDDRSKNAE NAIVKEAISA KFELGNSSSD PSSTVDSQTS DSSNDQESEE 300 ELWMGQWIRI SGDKEVKFSQ KLGVPVVDNY GFLLGEFSKL DDLSISL* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548599.1 | 0.0 | PREDICTED: dentin sialophosphoprotein-like | ||||
TrEMBL | A0A2G2YCW8 | 0.0 | A0A2G2YCW8_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037760 | 8e-65 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15531 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28370.1 | 1e-13 | ERF domain protein 11 |