PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g20930
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 280aa    MW: 28666.6 Da    PI: 9.0363
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g20930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-071033225
                -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                kt++C  f+ t  C++G++C+F H
  CA10g20930 10 KTKPCTKFFSTAGCPFGESCHFLH 33
                9*********************** PP
2zf-CCCH29.81e-097196227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt+lC+ f     Ck+Gd+C+FaHg+
  CA10g20930 71 KTKLCNKFNTAEGCKFGDKCNFAHGE 96
                8***********************96 PP
3zf-CCCH34.43.6e-11246270126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+lC +f + G C +G+rC+FaHg
  CA10g20930 246 YKTKLCENFTK-GSCTFGERCHFAHG 270
                 9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.43835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131836IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6934IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-51033IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-91033IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-136799IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-86899IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0236997IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-46996IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-77196IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.24E-14135212IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.7E-15140210IPR004088K Homology domain, type 1
SMARTSM003223.9E-11140210IPR004087K Homology domain
PROSITE profilePS5008414.068141205IPR004088K Homology domain, type 1
CDDcd001057.43E-13143205No hitNo description
PfamPF000133.2E-11143207IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.6E-16242276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-8243275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577245272IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7245271IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8246270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDSLSGVGSK TKPCTKFFST AGCPFGESCH FLHYVPGGYN AVAQMMNLGP APASRNAPAP  60
PMANGNAPAV KTKLCNKFNT AEGCKFGDKC NFAHGEWEIG KPIVPSQEDP RAMGVGPIPG  120
RFGAGRMEPP VSGHAASFGT SATAKISVDA SLAGAIIGKG GVHSKQICRQ TGAKLAIRDH  180
EADASLKNIE LEGTFEQISQ ASAMVRELIS SLGPVGGGPG RAPTGPGGHG RAPTGPGGPP  240
PSMSNYKTKL CENFTKGSCT FGERCHFAHG AAEMRKTGV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445800.0AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543877.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-104C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U8E9J70.0A0A1U8E9J7_CAPAN; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G2VWF10.0A0A2G2VWF1_CAPBA; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G2YP540.0A0A2G2YP54_CAPAN; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2G3BHS80.0A0A2G3BHS8_CAPCH; Zinc finger CCCH domain-containing protein 14
STRINGXP_009780696.11e-168(Nicotiana sylvestris)
STRINGXP_009614706.11e-168(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-74C3H family protein