PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g20880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SBP | ||||||||
Protein Properties | Length: 329aa MW: 35913.5 Da PI: 8.113 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 99.5 | 2.8e-31 | 36 | 104 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+adls+ak y++rhkvC +hsk+p+++v+gleqr fh+l efD++krsCrrrLa hnerrrk+ CA10g20880 36 RCQVEGCQADLSDAKAYYSRHKVCGMHSKSPTAVVAGLEQR-------FHQLPEFDQGKRSCRRRLACHNERRRKP 104 6**************************************97.......7*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-25 | 30 | 91 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.324 | 34 | 104 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.8E-31 | 35 | 108 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.0E-21 | 37 | 103 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGTWKKSEME LSSSDSLNSL KFGKKIYFGN GGQPPRCQVE GCQADLSDAK AYYSRHKVCG 60 MHSKSPTAVV AGLEQRFHQL PEFDQGKRSC RRRLACHNER RRKPPSGSLF STHYGNLSSS 120 VFENNSSRSG SFLVDFSSHQ NVNESSWPNT RASEQGWDHP STASGKFLQR PWLNNSEKAA 180 SELVLQGSTT RTSYPGVPSG DCFPGVSDSN GALSLLSNRS WGSRNQPPSL GVNSQINVNE 240 THVIQPSGSH VAPTNHFSSP SLGFKGNEAS SSLHELPPDL GLGQMLQASD NPYCGELEIA 300 QHGDGRQHME MDHSKGYHPS VQNVHWTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-21 | 37 | 103 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244580 | 0.0 | AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016543868.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2G2YP47 | 0.0 | A0A2G2YP47_CAPAN; Uncharacterized protein | ||||
STRING | Solyc10g078700.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4571 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57920.1 | 2e-41 | squamosa promoter binding protein-like 15 |