PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g20490

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YA

Protein Properties

Length: 163aa MW: 18518.6 Da PI: 10.2886

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g20490	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	94.6	1.1e-29	15	71	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+ ++k+ ksrkpylheSRh+hA+rR+R gGrF CA10g20490 15 EEPMYVNAKQYHGILRRRQLRAKAVLQQKV-VKSRKPYLHESRHRHAMRRARDGGGRF 71 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.2E-33	13	74	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.792	14	74	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-26	16	71	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-22	17	39	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-22	48	71	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MHHNGRMILP IEVKEEPMYV NAKQYHGILR RRQLRAKAVL QQKVVKSRKP YLHESRHRHA 60 MRRARDGGGR FLNTKKNNQH PTNNNNNNAT ASSEGKGGSL VSDSSANYLL NYEQDIGSSN 120 NGEGFQFQGI HGTTKENLQL GCHYQWNLND NNHCNCMHSA HF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	15	78	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	64	RHRHAMRRAR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543840.1	1e-118	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	2e-29	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2G2YP27	1e-118	A0A2G2YP27_CAPAN; Nuclear transcription factor Y subunit A-7
STRING	Solyc10g079150.1.1	1e-77	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13392	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	9e-30	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]