PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g19330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | G2-like | ||||||||
Protein Properties | Length: 377aa MW: 42837.7 Da PI: 5.2843 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.9 | 1.1e-28 | 214 | 268 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rF+e+ ++LGG++kAtPk+il+lm+ ++Ltl++vkSHLQkYR CA10g19330 214 KTRIRWTEDLHDRFLECANRLGGADKATPKQILNLMDSESLTLDQVKSHLQKYRN 268 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.255 | 211 | 271 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-16 | 212 | 268 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.0E-26 | 213 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-24 | 214 | 269 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-6 | 218 | 267 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.2E-19 | 313 | 360 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MSIQRFISTQ GNEFSSDCTL EFPKSSGQVQ DFVDQQLQYS SYMELCNFQL ASSSSSSIIS 60 CIGSPSSAFF ATERCLGLTQ YDNQDDTSQT ENYDLQMSSY DPQQCRNGFF EDSMVQSEPI 120 SLPSFISPEG PCRQYTFSDA SEEERMLHLK NKLLGEFDAS YRRHPALPFD GNQDYCLSHD 180 LCGSQLTRMR QQSLSPSLTC HNSASSGATQ KPSKTRIRWT EDLHDRFLEC ANRLGGADKA 240 TPKQILNLMD SESLTLDQVK SHLQKYRNAK HPESAGKSEK RNSLDTVTDI ESKTYATCYS 300 LRFNLLILLF MLVQITEALK MQLEVQRCLH EQLENQRTLQ TRIEEQAKKL RMILDQQQNT 360 NRTVLETRNS NVSSDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-17 | 214 | 271 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-17 | 214 | 271 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-17 | 214 | 271 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-17 | 214 | 271 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-17 | 214 | 271 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-17 | 214 | 271 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-17 | 214 | 271 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-17 | 214 | 271 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-17 | 214 | 271 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-17 | 214 | 271 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-17 | 214 | 271 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-17 | 214 | 271 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016544890.1 | 0.0 | PREDICTED: uncharacterized protein LOC107845150 | ||||
TrEMBL | A0A2G2YNP3 | 0.0 | A0A2G2YNP3_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060855 | 1e-177 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2491 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-47 | G2-like family protein |