PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g19210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 321aa MW: 36148.3 Da PI: 8.8896 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.3e-18 | 183 | 237 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k CA10g19210 183 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 237 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128 | 4.1e-41 | 183 | 273 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk CA10g19210 183 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLHKELQELR-ALK 273 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.34E-18 | 173 | 240 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 179 | 239 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-16 | 181 | 243 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.02E-15 | 183 | 240 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-17 | 183 | 237 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-15 | 183 | 237 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 214 | 237 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.0E-10 | 239 | 273 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.1E-25 | 239 | 282 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MELALSLGGE TPKPIMFLEK SSSSSSSLHE KKVNKDDLGF CMVLGKCNEG HEDENGRRKR 60 SRNHHQEVTI CSKGSSSKDL SLQLDLLPSS KNTSSQLGFP WLSQNLATEP AGLTNGPALE 120 AEEGAALSSP NSEISSFQMN FPIYRNGKLI NMKRDQYDGD YKWGNINNYS TSRASDEDDA 180 SARKKLRLTK EQSAFLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ 240 TEVDCEYLKK CCETLTEENK RLHKELQELR ALKSSQPFYM QLPATTLTMC PSCERVATTS 300 ATTTTXXXXX XTRRGFIIIS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 239 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244286 | 7e-75 | AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence. | |||
GenBank | HG975449 | 7e-75 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 7e-75 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016543668.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 4e-90 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A2G2YNP1 | 0.0 | A0A2G2YNP1_CAPAN; Homeobox-leucine zipper protein HAT14 | ||||
STRING | PGSC0003DMT400060951 | 1e-162 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-67 | homeobox from Arabidopsis thaliana |