PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g18410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 290aa    MW: 33954.4 Da    PI: 9.5333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g18410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-175196147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l ++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
       CA10g18410 51 RGHWRPHEDSKLRELVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 96
                     899*****************************.***********996 PP

2Myb_DNA-binding57.82.5e-18103146146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
       CA10g18410 103 RMAFSEEEEERLLTAHKMYGNK-WSMIARLFP-GRTDNAVKNHWHV 146
                      789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1324697IPR017930Myb domain
SMARTSM007178.1E-145099IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-2850144IPR009057Homeodomain-like
PfamPF002498.3E-165196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2652104IPR009057Homeodomain-like
CDDcd001674.38E-125495No hitNo description
PROSITE profilePS5129425.85998152IPR017930Myb domain
SMARTSM007171.4E-14102150IPR001005SANT/Myb domain
PfamPF002494.9E-15103145IPR001005SANT/Myb domain
CDDcd001676.58E-11105145No hitNo description
Gene3DG3DSA:1.10.10.601.3E-20105151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNFLVPCVEQ SPWSFNHEEN LRKLKDEIEE ENLVDMKKNN NNNGGTKLCV RGHWRPHEDS  60
KLRELVAQYG PQNWNLIAEK LDGRSGKSCR LRWFNQLDPR INRMAFSEEE EERLLTAHKM  120
YGNKWSMIAR LFPGRTDNAV KNHWHVIMAR KHREQNSVYR RRKSTSSNLQ QIIAPNNNNN  180
DSIIQIKSNN MQSDLTISSN NCNNNNIIVD DHQSASTCTD LSLTPSSSKP MFPPFLMTRF  240
THHHHVEHQG FLDSNKGIIF FSLLFHLSKI ILNYIYKLYK KEFPESRVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-33451511107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-102HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-102HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555092.10.0PREDICTED: transcription factor LAF1
SwissprotQ5NBM82e-73CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A1U8F6Y80.0A0A1U8F6Y8_CAPAN; transcription factor LAF1
STRINGPGSC0003DMT4000722581e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-72myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]